Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3998 93.3 6e-13 >seq3998 Length=1043 Score = 93.3 bits (102), Expect = 6e-13 Identities = 215/316 (68%), Gaps = 15/316 (5%) Strand=Plus/Minus Query 165555 GTCATGCGCGCCTATGTCGAAAAGCCGCGCACGACCGTTGGATGGAAGGGCCTGGCCAGT 165614 || ||||| | |||| |||| |||||||| |||||||| || |||||||||||| || | Sbjct 504 GTGATGCGGGTCTATTTCGAGAAGCCGCGAACGACCGTCGGCTGGAAGGGCCTGATCAAT 445 Query 165615 GACCCCGATCTTGATGGCTCGTGCCGCCTGGCTGATGGCCTTGATACATCGCGCCGC--- 165671 || |||||||| || | | | | | | ||| ||| | |||| |||| Sbjct 444 GATCCCGATCTGGACGAGAGTTTCAACATCAACAAAGGC-TTGCGCC-TCGC-CCGCAAG 388 Query 165672 CTGCTGCGTGATCTCGTCGTCGACGTCGACCAACCCGTGGCCGTCGAGTTTCTCAGTCCT 165731 ||| ||| ||||| || || | | | |||| |||| ||||| ||| || Sbjct 387 CTGTTGCTCGATCTGAACGA--AC-TGGGCATGCCCGCGGCCACCGAGTACCTCGATC-- 333 Query 165732 CTGGTGGCCCCC---TATTTGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACC 165788 | | |||| ||| | | |||||| || | ||||||||| ||||||| || ||| Sbjct 332 -TCATCACCCCGCAGTATGTCTCCGACCTGATCGCTTGGGGCGCCATCGGTGCTCGTACC 274 Query 165789 ACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAA 165848 || ||||||||| ||||| || |||| |||| |||| | || |||| ||||| Sbjct 273 ACGGAGAGCCAGTCTCACCGTGAACTGGCATCGGGGCTGTCATGTCCGGTTGGATTCAAG 214 Query 165849 AACAGCACCGACGGCA 165864 ||| ||||||||||| Sbjct 213 AACGCCACCGACGGCA 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177262678397294