Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_026601.1 Length=37238 Score E Sequences producing significant alignments: (Bits) Value seq2106 161 2e-35 >seq2106 Length=2500 Score = 161 bits (178), Expect = 2e-35 Identities = 344/505 (68%), Gaps = 9/505 (2%) Strand=Plus/Plus Query 17039 GCCGCTATCGAGTATCTGGAGCGCAAGGGCTTCGCGATCACTTGGAACTGGCATGACGTT 17098 ||||| |||| || || ||| |||||||| | | | || ||||||||||| || | | Sbjct 1710 GCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGA-GAT 1768 Query 17099 GACGCGGCCA--CCCACGCCCGCGCTCTGACCGTTGCCAGAGCAGCACGCCTGGACGTGC 17156 | | | | | ||||||| || || | ||| |||| | | || || ||| ||||| Sbjct 1769 GCTG-GACGATGCCCACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACGTGG 1826 Query 17157 TCCAGGACATTCGCGACGCCCTGGTCGAGAACCTGGAGCGCGGCGAGACGCTACGAGATT 17216 | ||||||||||| | ||||| | || || | |||| | ||||| || | Sbjct 1827 TGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGGACT 1886 Query 17217 TCAAGCGCAACCTGCGGCCGACCCTGGAGGCGAAGGGCTGGTGGGGTCGCCAGGTGGTAG 17276 || | ||| || ||| || ||| | || |||||||||||||| ||| | | | Sbjct 1887 TCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCATCG 1946 Query 17277 TCG-CGCCGGATGGCGGCGCCGAGGTCGCACAACTGGGCAGCCCGCGCCGCCTGGATACC 17335 | | || || || |||||||||| | ||||||||||| | || |||| ||| Sbjct 1947 TTGACGGCGCCGGGAWTS-CCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCTACR 2005 Query 17336 ATCTACCAGACCAACATGCAGTCGGCCTACATGGCAGGGCGCTACGCGGCCGCCTACGAA 17395 ||||||| ||| ||| |||| || |||| |||||| | | ||| | |||| Sbjct 2006 ATCTACCGGACGAACCTGCAATCCGCCTTCATGGCGGCGAATTACCAAGAAATGGCCGAA 2065 Query 17396 GCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGATGGCGTTACCCGGCCC 17455 |||| ||| | |||||| || ||| || || |||||| |||| ||| ||||||||| Sbjct 2066 GCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCCGGCCC 2125 Query 17456 AGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCGATCTGGCAGCAC-AT 17514 ||||| ||| || | || ||||||| | |||||||| |||||| | ||| || Sbjct 2126 AGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG-AACACGAT 2184 Query 17515 CACCCCGCCCAATGGCTACAACTGC 17539 | ||||||||||||| ||||||| Sbjct 2185 CTGGCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119031960856800