Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_026603.1 Length=61251 Score E Sequences producing significant alignments: (Bits) Value seq3852 95.1 5e-15 >seq3852 Length=834 Score = 95.1 bits (104), Expect = 5e-15 Identities = 290/439 (66%), Gaps = 16/439 (4%) Strand=Plus/Minus Query 46670 CGAACGGCAAGAGCGTGCTCATGGACGTGCTCAGCACGGTGCTGGGCGACTACGCGATCA 46729 ||||||||||| ||| | || || ||| ||| | |||||||| ||||| | || Sbjct 620 CGAACGGCAAGTCGGTGTTTGTGAACACGCTGGCGACGATCCTGGGCGATTACGCCACCA 561 Query 46730 CAGCCCC---GGCGAACTTCCTGCTTGCGGGCCGCGACCGGCACGAGACGGAGATCGCCC 46786 || || || | |||| || ||| || |||| || || ||| || ||||| Sbjct 560 GCGCACCGATGGACACCTTCATGGAAGCGCGCGGCGATCGCCATCCGACCGACCTCGCCG 501 Query 46787 GGCTGCACGGCGCCCGCATGGTCGTCTGC--TCGGAGATCAACGCAGAGAGCAAGTTTG- 46843 | |||| |||||| ||| | || |||| | || || | | | |||| | | | | Sbjct 500 GCCTGCGCGGCGCGCGCTTCGT-GTCTTCCATC-GAAACCGA-GCAGGGCCGGCGCTGGA 444 Query 46844 ACGAGGCCAAGGTCAAGGTGCTGACCGGCGGCGACGTTCTGTCGGGCCGCTACATGCGGC 46903 |||| |||||||||||| | |||||||||||| |||| | |||| |||||| | Sbjct 443 ACGAATCCAAGGTCAAGGCCATCACCGGCGGCGACAAGGTGTCCGCACGCTTCATGCGCC 384 Query 46904 AGGACTATTTCGACTTTGTGCCGTCTCACACGCTGTTCCTGATGGGCAACCACCAGCCGC 46963 |||||| ||||| | ||||| || |||| | | |||||||||| ||| | Sbjct 383 AGGACTTCTTCGAGTACCTGCCGCAGTTCAAGCTGGTGATCGCGGGCAACCACAAGC--C 326 Query 46964 AGGTATCCGCGGGCGGTAC--GTCGTTCTGGCGGCGGCTGCGCCTTATCCCGTTCCTGCA 47021 | |||||| | || | || | ||| ||||||| ||| ||||||||| | Sbjct 325 CGCCATCCGCAACGTGGACGAGGCGATGAAGCGCCGGCTGCACCTGATCCCGTTCACGGT 266 Query 47022 CACGGTCCCGCCGGAGCAGCGCAATCCCAACCTCGCCGCTGAACTGGTCGCCGAGGAGGG 47081 ||| ||||||| ||| ||||| || | ||| ||| | ||| | ||| ||| | Sbjct 265 GACGATCCCGCCCGAGAAGCGCGATGGTCAGCTCACCGAAAAGCTGCTGGCC---GAGCG 209 Query 47082 CGCCGCAATCCTCGCCTGG 47100 || || |||||||| ||| Sbjct 208 CGACGGCATCCTCGCGTGG 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195868371503422