Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5639 118 1e-21 seq214 107 2e-18 >seq5639 Length=3794 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 |||| || || || |||||||| || ||||| | || | | || | || || | ||| Sbjct 848 TGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCA-TCTTCTAACTG 906 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||| || | || ||||| || || || |||||||| ||||||||||| Sbjct 907 TTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 966 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | ||||| || | ||| || || ||||| || ||||| ||||| Sbjct 967 AGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGT 1026 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716 ||| ||||| || || ||||||||||| Sbjct 1027 TAATGTTTTTACAAAGATTTGCATTTT 1053 >seq214 Length=8422 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || || || || |||| || ||||| ||||||||||| ||||| Sbjct 6471 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGAT 6530 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | ||||| || |||||||| || | || || || || || Sbjct 6531 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 6590 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||||||||| ||| || || | || ||||| | ||| || Sbjct 6591 ATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 6650 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || ||||| ||||| || ||||| ||||| Sbjct 6651 TCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || || || | |||| || ||||| |||||||| || || || Sbjct 6699 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 6758 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | ||||| || |||||||| || | || ||||| || || Sbjct 6759 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGG 6818 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||||||||| ||| || || | || ||||| | ||| || Sbjct 6819 ATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 6878 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||| || ||||| ||||| || ||||| ||||| Sbjct 6879 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505362472491240