Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1326 114 2e-20 >seq1326 Length=11127 Score = 114 bits (126), Expect = 2e-20 Identities = 212/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 || ||||| | ||||||||| || |||||||| || ||| | ||| | || | | Sbjct 3666 GCATTAATATTTGGTATAACAGGACAGGATGGGTCATATTTAAGCGAATTGCTTTTAGAT 3725 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATC 161083 || || |||||||| ||||| ||||| | ||| | ||||||||| |||||| Sbjct 3726 AAAGGATATGAAGTTCATGGGGTTATTAGGAGATGTAGTACATTTAATACAAAAAGAATA 3785 Query 161084 GATCATATCTTCGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCCTGAACATA 161143 |||||||| || || | ||| | | || || || ||||| ||| || ||| Sbjct 3786 GATCATATATTTGAAAAATTAAATTTACATTATGGTGATTTACTTGATAATAGTAATATA 3845 Query 161144 GTCTCTATCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCAT 161203 | ||| | || | || || |||| |||| || || || ||| ||||| |||||| Sbjct 3846 TTTTCTTTAATAACTAAAATAAAACCAAATGAAATATATAATTTAGCTGCACAAAGTCAT 3905 Query 161204 GTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAACCCTA 161263 || |||||| ||| || |||||||||||||||||| | ||| | || || ||| Sbjct 3906 GTAAAAGTAAGTTTTGAATTACCTGAATATACAGCACAATGTACAGCTATAGGTACACTA 3965 Query 161264 AGAGTATTGGA 161274 ||| |||| || Sbjct 3966 AGAATATTAGA 3976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729877711129560