Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_027298.1 Length=36814 Score E Sequences producing significant alignments: (Bits) Value seq2106 176 1e-39 >seq2106 Length=2500 Score = 176 bits (194), Expect = 1e-39 Identities = 351/510 (69%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 16436 AGGCCGCCATCGAGTACCTGGAGCGCAAAGGCTTCTCGATCACCTGGAACTGGCACGA-- 16493 ||||||| |||| ||||| ||| ||| |||| | | | |||||||||||||| || Sbjct 1708 AGGCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGAGA 1767 Query 16494 TGTTG-ACGCGGCCACCCATGCCCGAGCGCTGACGGTGGCCAAGGCGGCACGCCTGGACG 16552 || || ||| ||| || || || || | || | || ||| |||| || ||| ||| Sbjct 1768 TGCTGGACGATGCC---CACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACG 1823 Query 16553 TGCTCCAGGACATCCGCGACGCACTGGTCGATAACCTGGAACGTGGCGGAACGCTGCGCG 16612 || | |||||||| || | || || | || || | ||| |||||| | Sbjct 1824 TGGTGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGG 1883 Query 16613 ACTTCCAGCGCAACCTGCGGCCGATCCTGGAGGCCAAGGGCTGGTGGGGACGCCAGATTG 16672 ||||||| ||| || ||| | ||| | ||||||||||||||||| ||||| Sbjct 1884 ACTTCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCA 1943 Query 16673 TGGTTG-CGCCGGACGGCGGCGCCGAGGTCGCCCAGCTCGGCAGCCCGCGCCGGCTGGAA 16731 | |||| || || ||| |||||||||||| ||| |||||||| | ||||||| Sbjct 1944 TCGTTGACGGCGC-CGGGAWTSCCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCT 2002 Query 16732 ACCATCTATCAGACCAACATGCAGTCGGCCTACATGGCCGGGCGCTATGCCGCCGCATA- 16790 || ||||| | ||| ||| |||| || |||| |||||| |||| | || || Sbjct 2003 ACRATCTACCGGACGAACCTGCAATCCGCCTTCATGGC--GGCGAATTACCAAGAAATGG 2060 Query 16791 -CGAGGCCAGGGAAACCCACCCCTACTGGATGTATGTGGCCGTCATGGACAGCGTCACCC 16849 ||| |||| ||| | ||||||||| ||| || || || || ||||| || ||||| Sbjct 2061 CCGAAGCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCC 2120 Query 16850 GGCCCAGCCATGCGGCGCTACATGGCAAGGTGTACCGCTGGGACGACCCGATCTGGCAGC 16909 |||||||||| ||| | | ||| |||| |||| ||||| || |||||| | | Sbjct 2121 GGCCCAGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG-AAC 2179 Query 16910 AC-ATCATGCCGCCGAATGGCTACAACTGC 16938 || ||| |||||| ||||||| ||||||| Sbjct 2180 ACGATCTGGCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117675252485744