Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_027384.1 Length=37359 Score E Sequences producing significant alignments: (Bits) Value seq2106 161 2e-35 >seq2106 Length=2500 Score = 161 bits (178), Expect = 2e-35 Identities = 348/510 (68%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 16990 AGGCCGCCATCGAGTACCTGGAGCGCAAAGGCTTCTCGATCACCTGGAACTGGCACGA-- 17047 ||||||| |||| ||||| ||| ||| |||| | | | |||||||||||||| || Sbjct 1708 AGGCCGCGATCGCCTACCTCCAGCACAAGGGCTACAAGCTTACCTGGAACTGGCAGGAGA 1767 Query 17048 TGTTG-ACGCGGCCACCCATGCCCGAGCGCTGACGGTGGCCAAGGCGGCACGCCTGGACG 17106 || || ||| ||| || || || || | || | || ||| |||| || ||| ||| Sbjct 1768 TGCTGGACGATGCC---CACGCACGGGCCTTTACCATTGCGAAGSCGGCGCGGCTG-ACG 1823 Query 17107 TGCTCCAGGACATCCGCGACGCACTGGTCGATAACCTGGAACGTGGCGGAACGCTGCGCG 17166 || | |||||||| || | || || | || || | ||| |||||| | Sbjct 1824 TGGTGCAGGACATTCGGAATGCCCTYGACGTCGCGCTCCGCCACGGCCAAACGCTCAAGG 1883 Query 17167 ACTTCCAGCGCAACCTGCGGCCGATCCTGGAGGCCAAGGGCTGGTGGGGACGCCAGATTG 17226 ||||||| ||| || ||| | ||| | ||||||||||||||||| ||||| Sbjct 1884 ACTTCCAAAAAAACTTGAAGCCCACGCTGCAAGCCAAGGGCTGGTGGGGCAAACAGATCA 1943 Query 17227 TGGTTG-CGCCGGACGGCGGCGCCGAGGTCGCCCAGCTCGGCAGCCCGCGCCGGCTGGAA 17285 | |||| || || ||| |||||||||||| ||| |||||||| | ||||||| Sbjct 1944 TCGTTGACGGCGC-CGGGAWTSCCGAGGTCGCCCSGCTGGGCAGCCCATGGCGGCTGGCT 2002 Query 17286 ACCATCTATCAGACCAACATGCAGTCGGCCTACATGGCTGGGCGCTATGCCGCCGCAT-- 17343 || ||||| | ||| ||| |||| || |||| |||||| |||| | || || Sbjct 2003 ACRATCTACCGGACGAACCTGCAATCCGCCTTCATGGC--GGCGAATTACCAAGAAATGG 2060 Query 17344 ACGAGGCCAGGGAAACTCATCCTTACTGGATGTATGTGGCCGTCATGGACAGCGTCACCC 17403 ||| |||| ||| | || || || ||| || || || || ||||| || ||||| Sbjct 2061 CCGAAGCCACGGACAGCCACCCCTATTGGCAATACGTCGCGGTGCTGGACGGCCGCACCC 2120 Query 17404 GGCCCAGCCATGCGGCGCTACATGGCAAGGTGTACCGCTGGGACGACCCGATCTGGCAGC 17463 |||||||||| ||| | | ||| |||| |||| ||||| || |||||| | | Sbjct 2121 GGCCCAGCCACCGGGCCATGAACGGCCGAGTGTTCCGCCATGACGATCCCATCTGG-AAC 2179 Query 17464 AC-ATCATGCCGCCGAATGGCTACAACTGC 17492 || ||| |||||| ||||||| ||||||| Sbjct 2180 ACGATCTGGCCGCCCAATGGCTTCAACTGC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119419134707974