Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq903 208 6e-49 seq89 201 9e-47 seq362 176 4e-39 >seq903 Length=7548 Score = 208 bits (230), Expect = 6e-49 Identities = 415/613 (68%), Gaps = 19/613 (3%) Strand=Plus/Minus Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 || || ||||| ||| ||||||||| || | | | ||||| || || ||| Sbjct 6128 ATAAAGCAATTAGGAATTAAACATGTAAAGGGTATGATATTATATGGTCCTCCTGGTACA 6069 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAA 19434 || ||||| |||| || || || || ||||| | | | | | | ||||| ||| Sbjct 6068 GGTAAAACTCTAATAGCTCGACAAATTGGTAAAACATTGAATGCTAGAGAACCT---AAA 6012 Query 19435 ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGA 19494 ||| | ||||| || ||||| ||||||||||||||||||||||| ||||||||| | || Sbjct 6011 ATTATTAATGGACCGGAAATATTAAATAAATATGTAGGTCAATCAGAAGAAAATATTCGT 5952 Query 19495 CGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGT--TCTTTGC 19552 ||| ||| || || ||| |||| | |||| | || |||| | | || | Sbjct 5951 AATTTATTTAAAGATGCAGAATTAGAATATAAACAATCTGG--AGAAAATTCATTATTAC 5894 Query 19553 ACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTAAAT- 19611 | ||||| ||| |||||||| | || ||||| ||| ||||||||| ||||| | | Sbjct 5893 ATATTATTATATTAGATGAAATAGATGCAATTTGTCGACAAAGAGGTAGTGGTGCATCTA 5834 Query 19612 --------GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 |||||| |||| | | || |||||| | | |||||| |||| || |||| Sbjct 5833 CTGGGTCAGGAGTAAATGATAGCATAGTTAATCAATTATTATCAAAAATAGATGGAGTTA 5774 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCG 19723 || | |||||||| ||| | || || ||||| |||||| | || ||||||| | Sbjct 5773 ACAGTTTAAATAATATATTATTAATCGGAATGACAAATAGAATAGATCTAATAGATGAAG 5714 Query 19724 CCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTG 19783 | |||||| |||| ||||| || ||| || | || ||||| ||||| || || | Sbjct 5713 CATTATTAAGACCAGGTCGATTTGAATTACATATTGAAATATCATTACCAAATAAAGAAG 5654 Query 19784 GACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATG 19843 | | | |||| ||||| || |||||| || ||| |||||||||| |||| || Sbjct 5653 GTAGAATCCAAATATTAAATATTCATACAAAAAATATGAGACAAAATAATAAGTTAAGTG 5594 Query 19844 ACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTG 19903 |||||| || |||||||| | || | ||| ||| | | || |||||| ||| Sbjct 5593 CAGATGTAAATATAGAAGAATTAGCTGAAAGAACCCCAAATTTTTCAGGTGCAGAAATTG 5534 Query 19904 AGGGATTAGTGAG 19916 | || ||||| || Sbjct 5533 AAGGGTTAGTAAG 5521 >seq89 Length=9661 Score = 201 bits (222), Expect = 9e-47 Identities = 572/864 (66%), Gaps = 29/864 (3%) Strand=Plus/Plus Query 43721 TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAA 43780 |||| ||| | ||| | | ||||||||||| | || |||||||||||||| |||||| Sbjct 823 TATCCTGAAGTTTGGAATTTTTACAAAAAAGCTGAAGCTTCATTTTGGACAGCTGAAGAA 882 Query 43781 GTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA--AAACCACAA-GAAAAACAT 43837 ||||||| | | || || | ||| ||| | | ||| ||| ||||||||| Sbjct 883 ATTGATTTATCGAGCGATTTGAAAGATT---TTGAAAAATTAAATGTCAATGAAAAACAT 939 Query 43838 TTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTG 43897 |||||| ||||| || |||||||| || || || || || || ||||||||| Sbjct 940 TTTATAAAACATGTTTTAGCATTTTTTGCAGCAAGTGATGGAATTGTATTAGAAAATTTG 999 Query 43898 GTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957 | |||| ||| |||||| || | |||||| | |||||| |||||| Sbjct 1000 GCTAGTAAATTTTTAAGAGAAGTAGAAATTATTGAAGCAAAAAAATTTTATTCTTTTCAA 1059 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAA 44017 || || | |||||||| ||||| |||| || ||| | | || |||| || || ||| Sbjct 1060 ATAGCTGTTGAAAATATACATTCTGAAACATATAGTTTATTAATTGATAATTATATTAAA 1119 Query 44018 GATGGGCACGAGAAGCATCGATTG-TTTAATGCGATAGAAACAGTACCTGCGATTAAACA 44076 |||| | || ||| | ||| ||| |||| || |||| |||| || || ||| | Sbjct 1120 GATGAAAAAGA-AAGATTAAATTTATTTCATGCTATTGAAAATATACCAGCTATCAAAAA 1178 Query 44077 TAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGT 44136 ||||||| ||||| ||||||||||||| | ||||||||| |||| || |||| Sbjct 1179 TAAAGCATTATGGGCTGCTAAATGGATAAATGATACAAATTCTTTTGCAGAAAGAATTGT 1238 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 || |||| ||| ||||| || || ||| ||| ||| || || |||||||| Sbjct 1239 AGCTAATGCATGTGTAGAAGGAATATTATTTAGTGGAAGTTTTTGTGCAATTTTTTGGTT 1298 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 || |||| | | | | ||| || || ||| ||||| ||||| ||| | ||||| Sbjct 1299 TAAAAAACAAAATAAATTACATGGTTTAACATTTAGTAATGAATTAATTAGTAGGGATGA 1358 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA-TCTAGGAGACGATAAGCCTT 44315 || |||||| ||||| | || ||| || ||| | || ||| |||| Sbjct 1359 GGGTTTACATACTGATTT---TAACTGTTTAATT-TATAGTTTATTAGAAAATAAATTAC 1414 Query 44316 CATGTAAGACAATTACAGATATTGTTGTAGAGGCAGT--AA--AGATAGAACAAGAATTT 44371 || || || | |||| ||| ||| ||||| || ||| ||| || |||| Sbjct 1415 CAGAAAATGTTGTTCAAAATATAGTTAAAGAAGCAGTTGAAGTAGAAAGATCATTTATTT 1474 Query 44372 ATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATAT 44431 ||| | | |||||| ||||||| ||||||||| | | ||| |||||| Sbjct 1475 GTGA----ATCTTTACCTTGTGATTTAATTGGAATGAATTCAAGGCTCATGTCTCAATAT 1530 Query 44432 ATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGATAAACACTAT-AT 44487 ||||||| |||| ||| | ||| || ||| | || || |||| | | || Sbjct 1531 ATTGAATTTGTTGCTGATAGATTA---TTAGAATGTTTAGGATGTTCTAAAGTTTTTCAT 1587 Query 44488 TGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTT 44547 | || ||||||| || ||| ||||| || || || |||| |||||||| || || Sbjct 1588 TCTA-AAAACCCTTTCAATTGGATGGATTTAATATCTTTACAAGGAAAAACAAATTTCTT 1646 Query 44548 TGAAAAACGCGTTGGAGAATATCA 44571 ||||||| | |||| ||| ||||| Sbjct 1647 TGAAAAAAGAGTTGCAGATTATCA 1670 >seq362 Length=22319 Score = 176 bits (194), Expect = 4e-39 Identities = 388/579 (67%), Gaps = 2/579 (0%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || |||| ||||||||| | ||| | ||| ||| |||||| | |||||| Sbjct 17106 TTTCCATTATTAACAACAAAAAAATTATTTGTGCGAGGTATTATTGAAGAATTATTATGG 17165 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 ||||| | ||| || |||| || | ||| | ||||| | || || ||| | Sbjct 17166 TTTATAAGAGGAGAAACAAATGGAAATACATTGTTAGAAAAAAATGTAAGAATATGGGAA 17225 Query 40812 GCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGAT 40871 || | | | | | || ||| || | | |||| |||| || | |||| Sbjct 17226 GCTAATGGAACAAGAGAATTTTTAGATAATAGAAAATTATTTCATAGAGAAGTTAATGAT 17285 Query 40872 CTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACA-CTATGTA 40930 ||||||||| |||||||||| || | | |||||||||| || ||||| ||| |||| | Sbjct 17286 CTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGGTGCTGAATAT-ACAGATATGCA 17344 Query 40931 CTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATC 40990 | |||||| ||||||| | |||||| || | ||||| || |||||| Sbjct 17345 TGATAATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATTTAATTAAAAA 17404 Query 40991 CGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGAT 41050 ||||| | |||| || || || || || ||||| || || || || || Sbjct 17405 TGATCCTACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGATAAAAT 17464 Query 41051 GGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATG 41110 |||||| || || |||||| | |||||||| ||||| |||| |||| || | ||||| Sbjct 17465 GGCATTACCTCCATGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATCATG 17524 Query 41111 TCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170 | ||||||||||||| |||| | |||||||| || || |||||||| || ||| Sbjct 17525 TATTATGTATCAAAGATCTTGTGATTTAGGACTAGGAGTTCCATTTAACATTGCTTCTTA 17584 Query 41171 TGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCA 41230 | || | | || |||||||| ||||| || || ||| |||| | ||||||| | || Sbjct 17585 TTCTATATTTACATATATGATAGCACAAGTATGTAACTTACAACCAGCTGAATTTATACA 17644 Query 41231 CACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 || || ||| ||| |||| | |||||| || || Sbjct 17645 TGTATTGGGTAATGCTCATGTTTATAATAATCATATTGA 17683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428452200435