Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq8 134 1e-26 seq5639 116 3e-21 seq214 87.8 2e-12 >seq8 Length=6382 Score = 134 bits (148), Expect = 1e-26 Identities = 680/1067 (64%), Gaps = 34/1067 (3%) Strand=Plus/Plus Query 130732 AAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAAC 130791 ||||||||||| |||||| ||||| | || |||||| | || |||||| Sbjct 3503 AAGATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATA 3562 Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851 || ||||| || || | ||||| || ||||| || || || || ||||||| || | Sbjct 3563 ATAGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGA 3622 Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG 130911 || || ||||| ||| | | |||||||| | | || ||| | | |||||| Sbjct 3623 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTT 3682 Query 130912 CTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTG---TTCCACATATCAAA 130968 || ||| |||||||||||| | | || | || || |||||||||||||| Sbjct 3683 TTTTAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTACATTCCACATATCAAA 3739 Query 130969 TTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACG 131028 ||||| ||| |||| ||| || || || || | ||||| || ||| | | | Sbjct 3740 TTGTAATATCCCTTGACTTGCTGGGCTACCTTTATATGATTCATATGGTCCATGTATTTG 3799 Query 131029 AGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT 131088 || | || ||| |||||| | ||||| || ||||| ||| |||||| Sbjct 3800 TGCTAATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATT 3859 Query 131089 TAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAG 131148 ||||| ||| |||| | || || ||| || | | | ||||| | |||||| | Sbjct 3860 TAATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAA 3919 Query 131149 ACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGT 131208 || |||| || | || | |||| |||| || ||| |||| | || | Sbjct 3920 TCCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAAT 3979 Query 131209 GGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCT 131268 || ||| || | ||||| ||||| | |||||| | | ||||| || | Sbjct 3980 TGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 4039 Query 131269 TTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATT-GATTTACACATA 131327 | ||||| | |||||||| |||| | ||||||| | | | || | Sbjct 4040 ATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA-A 4098 Query 131328 TTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGC 131385 |||| |||| ||||||||| || ||| ||| | || ||| | || ||||| Sbjct 4099 TTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGT--ATATTCAATTATTTCACA 4156 Query 131386 GCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG 131445 || |||||||| | || || || || ||||||| |||||| ||||| ||| ||||| Sbjct 4157 ACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATT-ACATG 4215 Query 131446 G-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA 131504 || || || | ||| || || || ||||| | |||| ||| | ||| | | || Sbjct 4216 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAAT--AGCAAA 4273 Query 131505 --AGAGTTTTCGAGCAG--ACAATTGATATTTGTA--TTGGCCGCGTTTTTCGTAATTTT 131558 | | | | | ||| ||| || | || || || | || ||| || ||| Sbjct 4274 CCATAAATCTTGTGCAAGAACAGTTTTTTTTCCTAAATTTTC----TTCTTCATATTTTG 4329 Query 131559 CGTACAACGTTTCAAAGTTTTGGCCAAACGA---ACTGTCCAAATTGGGACATTCGCTGG 131615 || || ||||||| | || || | || ||| || |||||||| | | Sbjct 4330 TATATAATTTTTCAAATTCTTCACCCCAAGATTCACTT---AACCCTGGACATTCATTAG 4386 Query 131616 GACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCC 131675 |||||||||| | ||| | || | || |||| |||||||| ||||| || |||| Sbjct 4387 GACACATTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCC 4446 Query 131676 ATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-tCAAA 131734 | | || || || | |||||||||| || |||||| || |||| ||||||| | ||| Sbjct 4447 AAATAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTA-CCATGATTTTTTCTTAAA 4505 Query 131735 TTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | |||||| || ||||| || | |||||| ||||| | ||| || || Sbjct 4506 TCTAAAAATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGC 4552 >seq5639 Length=3794 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || |||||||||||||| ||||| | | ||||| || | |||| Sbjct 841 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGC-CATCTT 899 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | |||||| || || |||| | | |||||||| || || | || |||||||| Sbjct 900 CTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTT 959 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || || ||| | |||| | |||||| | | |||||| || ||||| || | || Sbjct 960 GAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTT 1019 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 1020 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1050 >seq214 Length=8422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| || || |||||||||||||| || || | | |||| | | || Sbjct 6942 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTAC-CATC 7000 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | | ||||| || || || | ||||||||||| Sbjct 7001 TTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATC 7060 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||| || ||| | |||| | ||| || | | ||| || || |||||||| | Sbjct 7061 TTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGT 7120 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | ||||| ||||| || |||||| || || Sbjct 7121 TTTTCCAGTTAATGTTTTTACAAAAATCTGCATACCTCCT 7160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| || || |||||||||||||| || || | | |||| | | || Sbjct 6714 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTT-CTACCATC 6772 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || || |||| | | |||||||| || || | || |||||||| Sbjct 6773 TTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATC 6832 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | |||| | ||| || | | ||| || || |||||||| | Sbjct 6833 TTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGT 6892 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | ||||| ||||| || |||||| || || Sbjct 6893 TTTTCCAGTTAATGTTTTTACAAAAATCTGCATACCTCCT 6932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424904947663944