Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq362 129 5e-25 >seq362 Length=22319 Score = 129 bits (142), Expect = 5e-25 Identities = 232/333 (70%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 111787 TGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCC 111846 ||||| ||||| ||||| | || | ||| ||||||||||||||| || ||||| || Sbjct 17611 TGTGCTATCATATATGTAAATATAGAATAAGAAGCAATGTTAAATGGAACTCCTAGTCCT 17552 Query 111847 ATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGA 111906 | ||| | ||||||||||| | |||||||| ||| | | |||||||||||| Sbjct 17551 AAATCACAAGATCTTTGATACATAATACATGATAATTTTCCATCAAAAACATAAAATTGA 17492 Query 111907 CAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAGGGTCC---CCATGCACAC 111963 || | | |||||| ||||| |||||||| || | | | | ||||||||| Sbjct 17491 CATAAAATATGACATGGAGGTAATGCCATTTTATCTAAATCTTTTACATTCCATGCACAT 17432 Query 111964 ATGATCATCCTTCTGC-TGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTG 112022 | || || | ||| | ||||| ||| || || ||| | ||| | ||| || || Sbjct 17431 AAAATAATTCGTCTACATGTAG-GATCATTTTTAATTAAATTTATAATATTTTTTAGTTG 17373 Query 112023 GTCTATCCCTTTACCAGTATAATCCGCCTG-ACATCCAGTGTATGTT--GCCCCATAGTG 112079 || | |||||| | |||||| | || | ||| ||||| || || ||| | || Sbjct 17372 ATCAACACCTTTATCTTTATAATTATCATGCATATC---TGTATATTCAGCACCAAAATG 17316 Query 112080 TCTCCATTGGAATCCATAAATAGGCCCCAGATC 112112 |||||||||||||||||||||||| || ||||| Sbjct 17315 TCTCCATTGGAATCCATAAATAGGACCAAGATC 17283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391918434127981