Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq214 114 8e-21 >seq214 Length=8422 Score = 114 bits (126), Expect = 8e-21 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || ||||| | ||| || |||||||| |||||||| || ||||||| | ||| Sbjct 6942 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCT 7001 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||| || ||||| ||||| | |||||||| || || | |||||| || ||| Sbjct 7002 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCT 7061 Query 34615 GTGATCTTTTGTTTTAACGATAA-AATTGTGTCT--TCGCTCTCCACTTCCACGGTTATC 34671 ||| ||| | |||||| | ||| || || | | ||| || || | ||||| Sbjct 7062 TGGAT-TTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA--TCAAGAGTTATG 7118 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| ||||| |||||||||||||| Sbjct 7119 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Score = 105 bits (116), Expect = 4e-18 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || ||||| | ||| || |||||||| |||||||| || ||||||| | ||| Sbjct 6714 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCT 6773 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | |||||| || ||||| ||||| | ||||| || || || | ||| || || ||| Sbjct 6774 TCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCT 6833 Query 34615 GTGATCTTTTGTTTTAACGATAA-AATTGTGTCT--TCGCTCTCCACTTCCACGGTTATC 34671 ||| ||| | |||||| | ||| || || | | ||| || || | ||||| Sbjct 6834 -TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA--TCAAGAGTTATG 6890 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| ||||| |||||||||||||| Sbjct 6891 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6925 Score = 104 bits (114), Expect = 1e-17 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || |||||||||||||| || || ||||||| | ||||| | |||||| || ||||| Sbjct 6507 TCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAA 6566 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 ||||| | |||||||| || || | ||| || || ||| ||| ||| | |||||| Sbjct 6567 ATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCT-TGAATTTTAGCTTTAACATT 6625 Query 34635 TAAAATTGTGTC--TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 | ||| || || | | ||| || || | ||||| || || || ||||| ||||| Sbjct 6626 TTCAATAGTATCGGATGGTTCT--ACATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTT 6683 Query 34693 ACAAAAATCTGCAT 34706 |||||||||||||| Sbjct 6684 ACAAAAATCTGCAT 6697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314707785993071