Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq2086 154 6e-33 seq4356 89.7 2e-13 seq2157 84.2 9e-12 >seq2086 Length=6755 Score = 154 bits (170), Expect = 6e-33 Identities = 737/1148 (64%), Gaps = 57/1148 (5%) Strand=Plus/Minus Query 33026 CCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTG 33085 |||||| || | ||||| ||||| | ||||| | ||||| ||||| || | Sbjct 1857 CCAGCAGGCGGTGGTTGTTGAACCAGGCTACCCATTCCAAGGTGGCGAGTTCGACGGCCT 1798 Query 33086 CACGGTTTTTCCAG----CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATG 33141 | ||| | |||||| ||| ||||| || ||| | ||||| | || |||||| Sbjct 1797 CCCGGCTCTTCCAGGGTGCTCGG-CGGTGGATCGGCTCGGTCTTGTACAAGCCGTTGATG 1739 Query 33142 CTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCG 33201 | || |||| ||||||||||| |||||| || || || | | | ||| Sbjct 1738 GTTTCGGCCAGGGCGTTGTCATAGCTGTCGCCACGGCTTCCGACGGAGGGCTCGATCCCG 1679 Query 33202 GCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGA 33261 || || || ||||| | |||| | || || ||||| |||||| |||||||| Sbjct 1678 GCCTCGGCCAGGCGCTCGGCATAGCGGATGGAGACGTACTGCGAGCCTCGGTCGCTGTGG 1619 Query 33262 TGGAT---------GGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCC 33312 || | ||||| ||| | ||||| ||| ||||||||||| || ||| Sbjct 1618 TGAACCAGGGCATCGGTGCGTTCCGGTTGCCGGGCGTACAGGGCCTGCTCCAGTGCGTCC 1559 Query 33313 AGCACGAATGTCGTTTC-CATAGACGATGA--GACCCGCCACCCCACGATGTATCCGGCA 33369 || ||||| |||| | | ||| || |||| ||||||||| ||||| ||| | |||| Sbjct 1558 AGGACGAA-GTCGGTCCGCATCGA--ATGACTGACCCGCCAGCCCACAATGCGCCGGGCA 1502 Query 33370 AACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAA 33429 ||||| ||||| | || |||||||| | |||||||||| || |||||| || || Sbjct 1501 AACACGTCAATCACGAAGGCCACATACAACCAGCCCTGCCAGGTCGAGACGTAGGTGAAG 1442 Query 33430 TCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCT 33489 || | |||||||||||| | || || || || ||| || | ||| || || | || Sbjct 1441 TCCGACACCCACAGCTGATTGGGACGATCCACCTTGAATTGCCAGTTGACCCGAT--CCA 1384 Query 33490 GC-GGCA----ACGGCTT--TCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAAC 33542 || |||| ||||| | || ||| | || || || ||| || || || | || Sbjct 1383 GCGGGCACGGGACGGCGTGGTCGGGC--ACCGTGGTGCGCACCACCTTGCCACGCCGCAC 1326 Query 33543 ACCGGCAAGTCCCATAACCGC--CATGAGACGTGCCACTGTACATCTGGCCACCCTGATT 33600 |||||| || ||| |||||| ||| || || | || || || | ||| ||| ||| Sbjct 1325 ACCGGCCAGCCCC--AACCGCTTCATCAGGCGCTCGACCGTGCAACGGGCGACCTGGATA 1268 Query 33601 CCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACCTG-ATGATTTTCATC 33659 ||||| || |||| | |||||||| || | || |||||||| ||| || | | Sbjct 1267 CCTTCGCGGTTCAACGGGCGCCAGACCTTGTCGGCGCCATACACCTGCATG-TTGGCGTG 1209 Query 33660 GTATACGCGCTGTATCTCTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTT 33719 | || ||||| || ||| | |||| | ||| |||| ||||| ||| Sbjct 1208 CCAGACCCGCTGAATTTCTGGCATCAGAACCGCATCGCGCTGGGCACG-----CGCGGGA 1154 Query 33720 ATCCGGATGATGT--CGCTGTTGCTGACAATGG---TAATACGTTGACGGGGCAATATGC 33774 | | || | || ||||| ||| |||| ||||| ||||||||||| || Sbjct 1153 AGCAGGCGGGGGTCGCGCTGCTGCGCCGCATGGCGCCAATACCCGGACGGGGCAATCCGC 1094 Query 33775 AGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGCAGCTTATCCA-GCAGTGGCA- 33832 | | |||| | ||| ||||||||| || || || || | | ||| || Sbjct 1093 AAGACCTTGCAGATCGGCTCGACCCCGTGGCTATCCCGGTGCCGGTCGATGAAGT--CAG 1036 Query 33833 TCATTTTTTCCAG-AGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAA 33891 ||| || || ||||||||| |||||||| || ||| | ||| ||| | | Sbjct 1035 TCA-GGACTCGAGCCGGCGGTCGAGCTCCGCCTGGGCGAAAAACGCGCTCGCCAGCTTCA 977 Query 33892 GGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGAC 33951 | || ||||| |||||| || || || ||||| | | || || | | Sbjct 976 GTATCTCGTTGGCCTTGCGCAGCTCCTTGACCTCGCGCTCCAGGGCCTCGAGGCGTTCGC 917 Query 33952 GTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCATGCTGGCGAACCC 34011 |||| || | || | | ||| | |||| ||| ||||||| ||| |||| Sbjct 916 GTTCGTCGGTCGT---CACGCCAGSGCGCAGACCGGCATCGATCTCATGCGTGCGTACCC 860 Query 34012 AGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGGGCAATGGAACAAATTGCCGCCC 34071 || | |||| || | | || |||||| ||||| ||||||||||| || ||||||| Sbjct 859 AGGTATGCAGGGTGTTGGCCGAACAGCCGATCTTCGGGGCAATGGACTCGATGGCCGCCC 800 Query 34072 ACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCCGCTGACGGACTT 34131 || | ||| ||| || || | | | ||||| || | ||||| | |||||||| Sbjct 799 ACAGCGAGGGATACTC-GCCACGGTGCTCTGCACCATGCGGACGGCCCGTTCACGGACTT 741 Query 34132 CGGGGGAA 34139 |||||||| Sbjct 740 CGGGGGAA 733 >seq4356 Length=872 Score = 89.7 bits (98), Expect = 2e-13 Identities = 68/78 (87%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 27183 GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 27241 ||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||| Sbjct 850 GGCCCTT-AGCTCAGTCGGTTAGAGCGAGCGACTCATAATCGCCAGGTCGTAGGTTCAAG 792 Query 27242 TCCAGCAAGGGCCACCAT 27259 ||| || || ||||||| Sbjct 791 TCCTACAGGGCCCACCAT 774 >seq2157 Length=2836 Score = 84.2 bits (92), Expect = 9e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 33984 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 34043 |||| ||| ||||||| ||| |||||| | |||| || | | || |||||| ||| Sbjct 2242 CCGGCATCGATCTCATGCGTGCGTACCCAGGTATGCAGGGTGTTGGCCGAACAGCCGATC 2183 Query 34044 TTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGA 34103 || ||||||||||| || ||||||||| | ||| ||| || | | ||| | Sbjct 2182 TTCGGGGCAATGGACTCGATGGCCGCCCACAGCGAGGGATACTCGCCACGGTGCTCCTGC 2123 Query 34104 ACCATACGAATCGCCCGCTGACGGACTTCGGGGGAA 34139 ||||| || || || || | |||||||||||||||| Sbjct 2122 ACCATGCGGATGGCACGTTCACGGACTTCGGGGGAA 2087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210916580292612