Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_028846.1 Length=61081 Score E Sequences producing significant alignments: (Bits) Value seq3852 91.5 6e-14 >seq3852 Length=834 Score = 91.5 bits (100), Expect = 6e-14 Identities = 186/271 (69%), Gaps = 9/271 (3%) Strand=Plus/Minus Query 46779 ACGAGGCCAAGGTCAAGGTGCTGACCGGCGGCGACGTCCTGTCGGGCCGCTACATGCGGC 46838 |||| |||||||||||| | |||||||||||| |||| | |||| |||||| | Sbjct 443 ACGAATCCAAGGTCAAGGCCATCACCGGCGGCGACAAGGTGTCCGCACGCTTCATGCGCC 384 Query 46839 AGGACTATTTCGACTTCATCCCGTCGCACACGCTGTTTCTGATGGGCAACCACCAGCCGC 46898 |||||| ||||| | | | ||| | || |||| | | |||||||||| ||| | Sbjct 383 AGGACTTCTTCGAGTACCTGCCGCAGTTCAAGCTGGTGATCGCGGGCAACCACAAGC--C 326 Query 46899 AGGTATCCGC-TGGTGGTAC--GTCGTTCTGGCGGCGGCTGCGTCTTATCCCGTTCCTGC 46955 | |||||| |||| || | || | ||| ||||||| || ||||||||| | Sbjct 325 CGCCATCCGCAACGTGG-ACGAGGCGATGAAGCGCCGGCTGCACCTGATCCCGTTCACGG 267 Query 46956 ACACGGTCCCGCCGGAGCAGCGCAATCCCAACCTCGCCGCTGAACTGGTCGCCGAGGAGG 47015 ||| ||||||| ||| ||||| || | ||| ||| | ||| | ||| ||| Sbjct 266 TGACGATCCCGCCCGAGAAGCGCGATGGTCAGCTCACCGAAAAGCTGCTGGCC---GAGC 210 Query 47016 GCGCCGCAATCCTCGCCTGGGTGGTGGCAGG 47046 ||| || |||||||| |||| ||| | ||| Sbjct 209 GCGACGGCATCCTCGCGTGGGCGGTCGAAGG 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195324408241442