Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5639 131 4e-25 seq214 123 6e-23 >seq5639 Length=3794 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||||||||| || ||||| || | | || || |||||||| | ||| || || Sbjct 854 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 913 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | |||||| |||||||||| |||||| || || || || || ||| Sbjct 914 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTA 973 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || |||||||| |||||| || |||||||| || ||||| || | || Sbjct 974 ACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1033 Query 211098 TTTACAAACACCTGCATTTT 211117 |||||||| | |||||||| Sbjct 1034 TTTACAAAGATTTGCATTTT 1053 >seq214 Length=8422 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || || || | || || |||||||| |||||||| || | || || || || Sbjct 6482 TCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACC 6541 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || | | ||||||||||||||||| |||||| || Sbjct 6542 ATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTT 6601 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| || ||||| || || || || ||| || || ||||| || Sbjct 6602 ATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTAT 6661 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || | || |||||||| | |||||| Sbjct 6662 AGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 6697 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || | ||| || |||||||| || |||||||| | || || || || Sbjct 6938 TCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACC 6997 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || | | ||||||||||||||||| ||| || || Sbjct 6998 ATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTT 7057 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||| || ||| || ||||| || || || || ||| || || ||||| || Sbjct 7058 ATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTAT 7117 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || | || |||||||| | |||||| Sbjct 7118 GGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 7153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159067538751755