Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq214 138 8e-28 seq5639 125 5e-24 >seq214 Length=8422 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || |||||||| || ||||| || || || | | Sbjct 6925 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 6866 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| | ||||| | |||| || || |||||||| | || || ||||| Sbjct 6865 GATACTATTGAAAATGTTAAAGCTAAAA-TTCAAGATAAAGAAGGAATCCCTCCTGATCA 6807 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || || ||||| || Sbjct 6806 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAA 6747 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || ||||||||||||||||| || ||||||| Sbjct 6746 TATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 6699 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || ||||| || || ||||| || || || | | Sbjct 6697 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 6638 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||| | |||||| || |||||||| | || || || || Sbjct 6637 GATACTATTGAAAATGTTAAAGC-TAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCA 6579 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || || || || || Sbjct 6578 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAA 6519 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || |||||| |||||||||| || ||||||| Sbjct 6518 CATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 6471 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || |||||||| || ||||| || || || | | Sbjct 7153 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 7094 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| | ||||| | |||| | || ||||| || | || || || || Sbjct 7093 GATACTATTGAAAATGTTAAAGCTAAAA-TCCAAGATAAAGAGGGAATTCCTCCTGACCA 7035 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | | || || ||||| || Sbjct 7034 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAA 6975 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || ||||||||||||||||| || ||||||| Sbjct 6974 TATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 6927 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAA 23696 |||||||| || ||||| || || || | | || ||| |||||| | ||||| | ||| Sbjct 7354 GGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTAAA 7295 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | || || |||||||| | || || |||||||| | ||||| ||||| || ||||| Sbjct 7294 A-TTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAACA 7236 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTT 23816 | | ||||| | | || || ||||| || || |||||||| || || |||||||| Sbjct 7235 ATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATTT 7176 Query 23817 AGTTTTAAGGTTGCGAGGAGG 23837 ||||||||| || ||||||| Sbjct 7175 AGTTTTAAGATTAAGAGGAGG 7155 >seq5639 Length=3794 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| | || |||||||| |||||||| || ||||| | Sbjct 1053 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 994 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||||| | ||||| | |||| || || |||||||| | || || || Sbjct 993 TCTGACACTATTGAAAATGTTAAAGCTAAAA-TTCAAGATAAAGAAGGAATTCCTCCTGA 935 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||||| ||||| || ||||| | ||||| | | || ||| || || Sbjct 934 TCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTA 875 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| || |||||||| || Sbjct 874 TAATATTCAAAAAGAGTCAACCTTACATTTGGT 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337986172448996