Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq214 113 1e-19 seq3814 107 5e-18 seq3365 84.2 5e-11 seq1209 84.2 5e-11 >seq214 Length=8422 Score = 113 bits (124), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||| | | ||||| |||||||||| || ||||| Sbjct 6956 AGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCC 7015 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 ||| || || | || ||||||||| || ||||| || || || |||||||| ||| || | Sbjct 7016 AGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGAT-TTTAGCTT 7074 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | ||| ||| || || || || | ||| || || | || || || || || || || | Sbjct 7075 TAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATG 7134 Query 225695 TTTTTATGAACACTTGCAT 225713 |||||| || | ||||| Sbjct 7135 TTTTTACAAAAATCTGCAT 7153 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || || || | | ||||| |||||||||| || |||||| Sbjct 6501 GTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 6560 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || ||||||||| || ||||| ||||| || ||||| || ||| || || Sbjct 6561 GCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAAT-TTTAGCTTT 6619 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | || || ||||| || || || || Sbjct 6620 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATAGTCTTTCCAGTTAATGT 6679 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | ||||| Sbjct 6680 TTTTACAAAAATCTGCAT 6697 Score = 104 bits (114), Expect = 6e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||| | | ||||| |||||||||| || ||||| Sbjct 6728 AGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCC 6787 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 ||| || || | || |||||| || || || || ||||| || ||||| || ||| || | Sbjct 6788 AGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAAT-TTTAGCTT 6846 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | ||| ||| || || || || | ||| || || | || || || || || || || | Sbjct 6847 TAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATG 6906 Query 225695 TTTTTATGAACACTTGCAT 225713 |||||| || | ||||| Sbjct 6907 TTTTTACAAAAATCTGCAT 6925 Score = 91.5 bits (100), Expect = 4e-13 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||| ||||| | | ||||| |||||||||| || ||||| Sbjct 7184 AGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCC 7243 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| || || | || |||||| || || ||||| ||||| || ||||| || ||| |||| Sbjct 7244 AGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAAT-TTTAGCTT 7302 >seq3814 Length=1146 Score = 107 bits (118), Expect = 5e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 443 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 384 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855 ||||| || |||||||||||||||||||| |||| | | |||| || | ||| |||| Sbjct 383 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCAACTTATCGCG 324 Query 7856 TTAGCT 7861 |||||| Sbjct 323 TTAGCT 318 >seq3365 Length=873 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| |||||||||||||| ||||||||||||||||| | ||||| || ||| | Sbjct 489 ATACTTCTGGATGACCAAAAAACCAGAATAAATGTTGATATAATATAGGGTCTCCTGCAA 548 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | |||||||||||| |||||||||| | ||| | ||| |||| Sbjct 549 AAGTTGGATCAAAAAATAATGTATTAAAATGTAAATCTGATAATAACA 596 >seq1209 Length=10963 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| |||||||||||||| ||||||||||||||||| | ||||| || ||| | Sbjct 5511 ATACTTCTGGATGACCAAAAAACCAGAATAAATGTTGATATAATATAGGGTCTCCTGCAA 5570 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | |||||||||||| |||||||||| | ||| | ||| |||| Sbjct 5571 AAGTTGGATCAAAAAATAATGTATTAAAATGTAAATCTGATAATAACA 5618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192444306586778