Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq89 206 2e-48 >seq89 Length=9661 Score = 206 bits (228), Expect = 2e-48 Identities = 590/897 (66%), Gaps = 15/897 (2%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| | ||||| || || | |||| ||||| |||||||| ||||| |||| ||| Sbjct 1683 AACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAA 1624 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || ||||| ||| || || || | | | || ||| ||| || Sbjct 1623 AGATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAA 1564 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | |||| ||||| |||||||| ||||| || |||||| | || || Sbjct 1563 ACATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCAT 1504 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481 ||||||||| ||||| |||| | || ||| ||| || ||| | | || || Sbjct 1503 TCCAATTAAA-TCACAAGGTAAAG---AT-TCACAAATAAATGATCTTTCTACTTCAACT 1449 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 |||||| | | ||||| || | || || | | ||||||| |||| | | | | Sbjct 1448 GCTTCTTTAACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACTATAA 1389 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | |||||| ||||||| ||| ||||| || || || ||||| | ||| ||| ||| Sbjct 1388 ATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAAT 1329 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || | | | | | ||||||| |||||| || || ||| ||| | Sbjct 1328 GTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTA 1269 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || ||||| |||||||| ||| ||||| | || | || || | | | Sbjct 1268 AATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTG---TA 1212 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 || || |||||||| ||||| ||||| || || | || || | | ||| Sbjct 1211 TCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATA 1152 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || | |||||| || | |||| | |||| ||||||| | || |||| || ||| Sbjct 1151 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 1092 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 || ||||||||||||||||||| | ||| || ||||| ||||| | | ||||| Sbjct 1091 TATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCA 1032 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCACT 4960 | | || ||||| | ||||| || ||| | || ||||| ||| || || ||||| Sbjct 1031 ATAATTTCTACTTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACAATTCCATCACT 973 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT 5020 ||||||||||| || |||||||| |||||| | | ||| | || | ||||| Sbjct 972 TGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTC 913 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | | |||||| | | |||||||| ||||||| | |||||||| || ||||| || Sbjct 912 AAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGC 853 Query 5081 TTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTT 5137 ||||||||| | | ||||| ||||||||| ||| ||| | | ||||||||| Sbjct 852 TTTTTTGTAAAAATTCCAAACTTCAGGATACATAATAGGATGCAATGTAAATCTGTT 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427020001058771