Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8 571 8e-158 seq89 230 3e-55 >seq8 Length=6382 Score = 571 bits (632), Expect = 8e-158 Identities = 1168/1717 (68%), Gaps = 38/1717 (2%) Strand=Plus/Plus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| |||||| | || | ||||| ||||| | ||||| ||||||| ||||||| Sbjct 3327 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 3386 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGAT 75634 |||| |||||| | | || ||| | |||| | |||| | | ||| ||| | | Sbjct 3387 CAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATATATTGTACACTT 3446 Query 75635 CCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || | || || |||||| | || || || |||| ||| | ||| || | Sbjct 3447 CCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAAG 3505 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | || | | | |||||||||||||| ||||| ||| ||||| | || | || Sbjct 3506 ATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAATA 3565 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 || ||||| ||||||||||| | |||||||| |||||||||||||| | ||||||||| Sbjct 3566 GATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGC 3625 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 || ||||||||||| | | | | |||||| | ||||| | || ||||| | ||| Sbjct 3626 TGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTT 3685 Query 75874 TAGATATTTCCAATCCCAA-AGATCTGATGGTACA---ACATCCCAGAGATCGTATTGTA 75929 || | | |||||||||| | | | || ||| |||| ||| | ||| |||||| Sbjct 3686 TAATAAATCCCAATCCCAATATTTATTATC-TACTTTTACATTCCACATATCAAATTGTA 3744 Query 75930 GAATTCCGTTGCTAGCATATGAT-CCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCT 75988 || || | || || | | | || ||||||| ||| || | || | ||| ||| Sbjct 3745 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 3803 Query 75989 AGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGA 76048 | ||| | | ||||| || | ||||| |||||||| || || | ||||| | Sbjct 3804 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 3863 Query 76049 TCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCC 76108 |||| |||||| | ||| | ||||| |||||| ||||||| ||||||| ||| Sbjct 3864 TCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATCCT 3923 Query 76109 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGG 76168 || ||||| || |||||||||| |||||| ||||| || ||||||||||| ||| ||| Sbjct 3924 TGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGG 3983 Query 76169 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTT 76228 |||||||| | || |||||||||| | |||||| || | |||| | || | | Sbjct 3984 TAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATAT 4043 Query 76229 AGTTTGAGAAAATCAAA-----TTTTCCATCTATC-ACAAA----CATATTAAGAGCTAT 76278 | ||| ||||||||| |||| |||||| ||||| |||| | || || Sbjct 4044 AATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAAT----GCAAT 4099 Query 76279 AGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCA 76338 || || | ||||||||| ||||| |||| || | ||||| ||||| || || Sbjct 4100 TGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACA 4159 Query 76339 TAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTC 76398 || ||||||||| || || ||||| | ||||| ||| || || ||||||| || Sbjct 4160 TAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATC 4219 Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 76458 ||||| | | | | || |||||||| || || || | ||||| ||| | Sbjct 4220 TTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATA- 4278 Query 76459 GACTCTAGCTTTTATTATAGATTTGTATC---GCTTCTCTCTTTCATATTGTGTATATAA 76515 | ||| | | | | || ||| | || || ||| |||||||| ||||||||| Sbjct 4279 -AATCTTG-TGCAAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAA 4336 Query 76516 CCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAA 76575 ||||||||| || |||||| ||| || || ||||||||||| |||||||| | Sbjct 4337 TTTTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACATTAG 4396 Query 76576 TGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 76635 || ||| | | || ||| || || | ||||||||| | |||||||| ||| | |||| Sbjct 4397 TGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 4456 Query 76636 AAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTC 76695 ||||| ||||| | ||| |||||| || || ||| ||| | | ||||| || || Sbjct 4457 AAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 4516 Query 76696 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACC 76755 | ||||||||||||||||||||||| ||||| || | | ||| || ||| || Sbjct 4517 AAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCC 4576 Query 76756 TCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTT 76815 || ||||||| |||||| || || | |||| ||||||| |||||||||| | || || Sbjct 4577 ACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATT 4636 Query 76816 AGATGTACCATTTGTTCCAGAAATATA--ACTTCCACATGCACGAATATTACTAATAGAT 76873 ||| ||||||| ||||| |||||| | ||| | | | |||| | || Sbjct 4637 TGATATACCATTAGTTCCTCTAATATAAGAATTC--TGTCCTCTTATATCTTGTACAGCA 4694 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||||| ||||| || ||||| |||| |||||| |||| ||||| ||| | || Sbjct 4695 ACTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATA 4754 Query 76934 CCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 76992 || || ||| ||| |||| | ||| ||||| || |||||||| || | Sbjct 4755 CCTTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGG 4813 Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||| |||||| |||||||||| ||||| ||||| |||| | ||| | || || Sbjct 4814 TGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATG 4873 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||| | | || ||| | ||| | ||| ||||| | | || | ||| || Sbjct 4874 ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAA 4933 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 | ||| || || ||||| | | | ||||| || ||| || || |||||| |||| || Sbjct 4934 TAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAA 4993 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 ||||| || |||||||| | || ||| |||||| Sbjct 4994 TGTTTTGAATCCAAAATAATCATAGTTAAAATCTCTT 5030 >seq89 Length=9661 Score = 230 bits (254), Expect = 3e-55 Identities = 398/573 (69%), Gaps = 14/573 (2%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| ||||||| ||| | || ||||| |||||||||||||| ||| |||| Sbjct 1388 ATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAAT 1329 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || | ||| | | ||| | | ||||| | |||||| || || ||| |||| Sbjct 1328 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCAC 1271 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC---TGGCAT 46798 ||| ||||| ||||||||| || || |||| ||| ||| | || | | || Sbjct 1270 TAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTAT 1211 Query 46799 CATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 |||| ||||| | |||||| || || || || | | || || |||| | Sbjct 1210 CATTT---ATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAA 1154 Query 46859 TAGCATTAAAGAGAAAGtt--tttttCATCACTATCTTTAACATATGTATCTATTAAAAG 46916 |||||| ||| | || || | |||| | |||||||| ||| |||| ||||| | Sbjct 1153 TAGCATGAAATA--AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAA 1096 Query 46917 ACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGC 46976 |||||| |||| ||||| || ||||||| ||| || ||||| ||||| | |||| Sbjct 1095 ACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGC 1036 Query 46977 TTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATC 47036 |||| |||| | ||| ||| | ||||| || |||||| || || |||||||| Sbjct 1035 TTCAATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATC 976 Query 47037 ACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 ||| || ||||||||||| || |||||||| ||||||| |||||||| | | | | ||| Sbjct 975 ACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTT 916 Query 47097 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTC 47156 | | || || | ||| | |||| ||| | ||||||||||||||| ||||| || || Sbjct 915 TTCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTC 856 Query 47157 TGCTTTTTTATACATATTCCATATATCACGATA 47189 |||||||| || | |||||| | ||| |||| Sbjct 855 AGCTTTTTTGTAAAAATTCCAAACTTCAGGATA 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712883719275840