Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_031059.1 Length=38773 Score E Sequences producing significant alignments: (Bits) Value seq3924 141 2e-29 >seq3924 Length=800 Score = 141 bits (156), Expect = 2e-29 Identities = 261/375 (70%), Gaps = 15/375 (4%) Strand=Plus/Minus Query 15766 CCTGCTTCGTGGGGGTCGACATTGCGGCGCGCAACGACCTGTTCGTGATCTGGGTGGTGG 15825 |||| || | || |||||||| ||||||||||||||||||||||||||||||||| | Sbjct 762 CCTGTTTTCTCGGCGTCGACATCGCGGCGCGCAACGACCTGTTCGTGATCTGGGTGT--G 705 Query 15826 AAGAGACG--GGCGGCCGG--CTGGTCACGCGCGAGGTGATTGCGCAAAAG-CGGATCAC 15880 ||| | || |||| | |||| ||||| ||| | | || || | || || | Sbjct 704 AAG-GCCGTAGGCGATGTGTACTGG--ACGCGTGAGATTCTGGC-CAGGCGACGTATTTC 649 Query 15881 ATTCGCCGAACAGGACGCGCTGCTGGACGATGTCTTCCGCCGTTATCGCGTGGTGCGCGC 15940 ||| ||||| ||| | ||| |||||| |||| ||| || || | || | ||| Sbjct 648 ATTTGCCGAGCAGSATGCGTTGCTGGCGGATGCGTTCAATCGCTACYGGGTCATACGCTG 589 Query 15941 GGGTATGGACCAGACCGGCATGGGCGAAAAACCGGTGGAGGACGCCAAGCGCCGCCATGG 16000 | ||||||||||| || |||||||| ||||| || || || || |||||||| || Sbjct 588 CTGCATGGACCAGACMGGGATGGGCGAGAAACCTGTCGAAGATGCACAGCGCCGCTTCGG 529 Query 16001 CGCGGCCCGCATCGACGGCGTGCTGTTCAGTGCGGGTTCA--AAGCTCGATCTCGCCACC 16058 | | |||| | || ||||| ||||||| ||| || ||||| | || || ||| Sbjct 528 CTCCAGCCGCGTTGAGGGCGTTCTGTTCA--CCGGCCCCAACAAGCTGGCGCTAGCGACC 471 Query 16059 GCGCTGAAGGAGAAGATGGAGGATCGCGAGATGTTGATCCCCGCGGGCGACCCGGTGCTG 16118 || ||||||| | ||||| ||| ||| |||||||| || ||| || ||| Sbjct 470 ACGGGGAAGGAGGCATTCGAGGACCGCCGGATCCGGATCCCCGAAGGGAACCAGGAGCTC 411 Query 16119 CGCGCCGATCTGCAC 16133 ||| |||||||||| Sbjct 410 CGCAACGATCTGCAC 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123943629134090