Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq89 242 4e-59 >seq89 Length=9661 Score = 242 bits (268), Expect = 4e-59 Identities = 565/840 (67%), Gaps = 33/840 (4%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| |||||||| || |||| | | |||| || |||||||| || || | Sbjct 1686 CATAACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTG 1627 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA---CA 23321 ||| ||||| ||||| ||| || || || || || | | || |||| || Sbjct 1626 TAAAGATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAAC---TTTAGAACA 1570 Query 23322 TGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATA 23381 | ||| | ||| | ||||| || |||||||||||||||||| |||| | | Sbjct 1569 TCCTAAACATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGA 1510 Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441 || || || |||| | || | | ||| | | ||| | |||| | ||| Sbjct 1509 ATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAAC 1450 Query 23442 AGCATCTTTAATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTT 23498 || ||||||| ||| |||||||| | |||| || | || || ||| | | Sbjct 1449 TGCTTCTTTAACTATATTTTGAACAACATTTTCTGG--TAATTT-ATTTTCTAATAAACT 1393 Query 23499 AAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGA 23558 | | | |||||| ||||||| ||||| || |||||||||||||| ||||||||| Sbjct 1392 ATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACT 1333 Query 23559 AAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 ||||||||| || || ||| || | ||||||||| |||||| |||||| ||| || Sbjct 1332 AAATGTTAAACCATGTAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTC 1274 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | ||| || || || || ||| ||| || |||| | | |||| | || Sbjct 1273 CACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGA---AT 1217 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA-ATTGTT 23736 | |||| |||||||| | ||| | | ||| | |||| || || || Sbjct 1216 TTGTATCATTTATCCATTTAGCAGCCCA-TAATGCTTTATTTTTGATAGCTGGTATATTT 1158 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTT----TTTCTTCATTATCTGTTATATATGTATCAAT 23792 ||||| || | || | || ||| |||||| | |||| | ||||| ||||||| Sbjct 1157 TCAATAGCAT----GAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAAT 1102 Query 23793 TAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACA 23852 || ||||||||| |||||||||| |||||||||| ||| || ||||| |||||| Sbjct 1101 TAATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTT 1042 Query 23853 TCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAAT 23912 | | |||||| | || || || | |||||| | |||| |||||||| ||||| Sbjct 1041 TTTTGCTTCAATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAAT 982 Query 23913 ACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CAGT 23969 |||||||| || ||||| || || | ||||| ||||||||||||| |||||| || | Sbjct 981 TCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATT 922 Query 23970 TGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 |||||||| |||| || | ||| | |||||||||| ||| ||| |||||||||| Sbjct 921 ---TAATTTTTCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAA 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521450928721800