Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20yoelii_20[genbank_20GCA_5F000003085.2_202002- 10-03] 5,687 sequences; 23,125,449 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq214 129 1e-24 seq5639 122 2e-22 >seq214 Length=8422 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | || ||||| || || || || || || ||| || || Sbjct 6694 CAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCCGAT 6635 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || ||||||||||| ||||| ||||| ||| Sbjct 6634 ACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAACAA 6575 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| || || || | || |||||| | Sbjct 6574 AGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAACATT 6515 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| | ||||| ||||| ||| | ||| Sbjct 6514 CAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGA 6476 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | || |||||||| || || || || || ||| || || Sbjct 6922 CAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCCGAT 6863 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || ||||||||||||||||| || || ||| Sbjct 6862 ACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAACAA 6803 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| || || || | |||||||| | Sbjct 6802 AGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAATATT 6743 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| | ||| | ||||| ||| | ||| Sbjct 6742 CAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGA 6704 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | || |||||||| || || || || || ||| || || Sbjct 7150 CAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCCGAT 7091 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || ||||| ||||| ||||| ||||| ||| Sbjct 7090 ACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAACAA 7031 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| || || || | |||||||| | Sbjct 7030 AGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAATATT 6971 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| | ||| | ||||| ||| | ||| Sbjct 6970 CAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGA 6932 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||||||||| || || || || || || || || || || || || || ||| | Sbjct 7356 CAGGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTA 7297 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | ||||| || ||||||||||| ||||| || || ||| || | || || || || |||| Sbjct 7296 AAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAAC 7237 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | | |||||||| || || || | |||||||| | |||||||||||||| | ||| Sbjct 7236 AATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATT 7177 Query 178126 TTGTTTTGAGACTCAGA 178142 | ||||| ||| | ||| Sbjct 7176 TAGTTTTAAGATTAAGA 7160 >seq5639 Length=3794 Score = 122 bits (134), Expect = 2e-22 Identities = 149/203 (73%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || || ||||| | || |||||||| ||||| || || || ||| Sbjct 1053 AAAATGC---AAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA 997 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || || || ||| || ||||| || ||||||||||| ||||| Sbjct 996 CCATCTGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCT 937 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||| || | || || || ||||||||| | |||||||| || || | | || Sbjct 936 GATCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGAC 877 Query 178095 TATAACGTCCAAAAAGAATCAAC 178117 ||||| | |||||||| ||||| Sbjct 876 TATAATATTCAAAAAGAGTCAAC 854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203643490502278