Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq9172 91.5 3e-13 seq72 91.5 3e-13 seq4936 89.7 9e-13 seq134 87.8 3e-12 seq16125 84.2 4e-11 >seq9172 Length=875 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||| |||||| ||||| ||||| |||||| | ||||||||||||| |||||||| Sbjct 528 ATGGTGGCCCCAGCTGGACTCGAACCAGCGACCGATCGATTATGAGTCGAGCGCTCTAAC 469 Query 272931 CAACTGAGCTATAGGCCC 272948 |||||||||||| || || Sbjct 468 CAACTGAGCTATGGGGCC 451 >seq72 Length=24514 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 |||||||||| |||||||| |||||||||||||| | ||||||| | ||||||||| Sbjct 17105 TGGTGGGCCCGGCAGGACTCGAACCTGCGACCAAACCGTTATGAGCGGTTCGCTCTAACC 17046 Query 272932 AACTGAGCTATAGGCCCT 272949 |||||||||| ||||||| Sbjct 17045 AACTGAGCTACAGGCCCT 17028 >seq4936 Length=1335 Score = 89.7 bits (98), Expect = 9e-13 Identities = 72/82 (88%), Gaps = 4/82 (5%) Strand=Plus/Plus Query 272869 ATATGGTGGGCCCAGCAGGACTTGAACCTGCGACC-AAGCGATTATGAGTCGC-CTGCTC 272926 ||||||| ||||| |||||||||||||| || ||| ||||| ||||||| ||| |||||| Sbjct 752 ATATGGTAGGCCCGGCAGGACTTGAACCCGCAACCAAAGCG-TTATGAG-CGCTCTGCTC 809 Query 272927 TAACCAACTGAGCTATAGGCCC 272948 ||||||| ||||||| |||||| Sbjct 810 TAACCAATTGAGCTACAGGCCC 831 >seq134 Length=17024 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||| | ||||| ||||| | |||||||| ||||||| |||| |||||||| Sbjct 2573 ATGGTGGGCCCGGAGGGACTCGAACCCCCAACCAAGCGGTTATGAGCCGCCGGCTCTAAC 2514 Query 272931 CAACTGAGCTATAGGCCC 272948 ||| ||||||| |||||| Sbjct 2513 CAATTGAGCTACAGGCCC 2496 >seq16125 Length=518 Score = 84.2 bits (92), Expect = 4e-11 Identities = 71/82 (87%), Gaps = 4/82 (5%) Strand=Plus/Minus Query 272869 ATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAA-GCGATTATGAGTCGC-CTGCTC 272926 ||||||| ||||| |||||||||||||| || ||||| ||| ||||||| ||| |||||| Sbjct 362 ATATGGTAGGCCCGGCAGGACTTGAACCCGCAACCAAAGCG-TTATGAG-CGCTCTGCTC 305 Query 272927 TAACCAACTGAGCTATAGGCCC 272948 |||||| ||||||| |||||| Sbjct 304 TAACCAGTTGAGCTACAGGCCC 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896754942654480