Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq308 105 5e-18 seq16 87.8 1e-12 seq578 86.0 4e-12 seq760 84.2 2e-11 >seq308 Length=10359 Score = 105 bits (116), Expect = 5e-18 Identities = 146/203 (72%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 99366 GAACGACAGCCGCGA--GGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAG 99423 |||||||| ||||| ||||| ||| |||||| || ||||||||||| | | Sbjct 4587 GAACGACA--CGCGACCGGGCATGTTCGACTTGATCAGACCCGTCACCACGTTTGCCTGC 4530 Query 99424 GGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGG 99483 || ||||||||||| |||| || || |||||| |||||||||| |||||||||||||| Sbjct 4529 GGACGCTGCGTCGCGAGGATCAGGTGGATGCCGACCGCACGCGCTTTCTGCGCGATGCGC 4470 Query 99484 ACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCC 99543 || || | | || || || || ||| ||||||||| || ||||| || || Sbjct 4469 ACGATCGCGCCTTCCACTTCCTTGTTG------GTCATCATGAGGTCGGCGAGCTCGTCG 4416 Query 99544 ACCACTACCACGATGTAGGGGAG 99566 | ||| | || ||||| || || Sbjct 4415 ATCACGAAGACCATGTACGGCAG 4393 >seq16 Length=58024 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 99388 TTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGA 99447 |||| ||||||| ||| || | ||||| || || || || ||||| || || | Sbjct 16160 TTGC-CTTGATGGTGCCGGTGATGACATCAACCGACGGGCGTTGCGTGGCGGTGATCATG 16218 Query 99448 TGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTC 99507 |||||||||||||| |||||| ||||||||| || |||| ||| |||| |||| Sbjct 16219 TGAATGCCGGCCGCGCGCGCCATCTGCGCGAGACGTTGAATGGCGGCTTCAATCTCT--- 16275 Query 99508 TTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGG 99563 ||| || |||||||||| || || | ||| || || | || ||||| ||||| Sbjct 16276 TTGCCCGCAACCATCATGAGGTCGGCCATTTCGTCAACAATGACGACGATATAGGG 16331 >seq578 Length=6702 Score = 86.0 bits (94), Expect = 4e-12 Identities = 207/307 (67%), Gaps = 16/307 (5%) Strand=Plus/Plus Query 99603 CATCTGCCGGTATCGGTCGTCCATCTCTACGGTGAGCCACCGCAGCGTTTTCACCGCCTC 99662 ||||| || || ||||| |||||||| | || ||| ||||| ||||| | Sbjct 753 CATCTTGCGATAGCGGTCTTCCATCTCGCCCACGACCCATTTCAGCGCGACAACCGCTTT 812 Query 99663 GTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTC 99722 | | || || || ||||| ||| ||||| ||||| |||| || || ||||| Sbjct 813 TTTCGGGTCGGTCACAACGGGGCTGAGCAGGTGCGGGATGCCGTCATAGACGGAAAGCTC 872 Query 99723 GACACAT-TTGGGGTCGATCATGATGAGTTTGAC-CCGATC---AGGGGTCGCCCGGTAG 99777 || ||| |||||||||||||||| | ||| | |||| |||||| | ||| Sbjct 873 GAG-CATCTTGGGGTCGATCATGACAA----GACGCAGATCCTGCGGGGTCAGCTTGTAA 927 Query 99778 AGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCC 99837 |||||||| | | ||| | |||||| | || || ||||| ||||| | ||| || Sbjct 928 AGCAGCGACAGGATCATGGTATTGATGGCGACCGATTTACCCGACCCGGTGGTGCCCGCG 987 Query 99838 ACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCC---TTGCCCTCGACGTCC 99894 | |||||| || |||||||| || ||||| || || || | ||| ||| |||| Sbjct 988 ATCAGCAGGTGGGGCATCTTGGCGAGGTT---GGCGACCACCGGGTCGCCGCCGATGTCC 1044 Query 99895 TTGCCCA 99901 ||||||| Sbjct 1045 TTGCCCA 1051 >seq760 Length=5455 Score = 84.2 bits (92), Expect = 2e-11 Identities = 185/276 (67%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 99292 TCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTG 99351 |||||||| |||| ||||||||||| || ||| ||||||| ||||| ||| | Sbjct 4334 TCACCCATGCCCAGCAGTTGCTCGGCGCCCTGCTCACCCAGGATAGTACGGCTGTCGATT 4393 Query 99352 AGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACC 99411 ||||| | |||||| | ||| | ||| | ||| |||||| || || | | Sbjct 4394 TTGGACGTCACGTGGAACGAAATCCGGGTGGGGAAGTTCGCCTTGATCGTACCAGTAATC 4453 Query 99412 ACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTC 99471 || || || || || ||||| || |||| || || || ||||| | ||| |||||| || Sbjct 4454 ACGTCAACCGACGGACGCTGTGTGGCCATGATCAGGTGGATGCCCGACGCCCGCGCCATC 4513 Query 99472 TGCGCGATGCGGACAATGTTGGCCTCAACCTCTTT-CTTGTAGCCACCCATCATGAGATC 99530 || || | || || || || | |||||| | || || ||||||| | ||| Sbjct 4514 TGTGCAAGCCGCTGGATACAAGCTTCGATCTCTTTGCCTG----CAACCATCATCAAATC 4569 Query 99531 AGCGAGTTCATCCACCACTACCACGATGTAGGGGAG 99566 ||| | ||||| || | || ||||| |||| || Sbjct 4570 AGCCATCTCATCGACGATCACGACGATAAAGGGCAG 4605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354571550658522