Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq5028 127 8e-25 seq13022 122 3e-23 seq6377 80.6 1e-10 >seq5028 Length=1324 Score = 127 bits (140), Expect = 8e-25 Identities = 522/805 (65%), Gaps = 40/805 (5%) Strand=Plus/Minus Query 52424 CTCACAGTGGGCGGCAATTTGTTCCATTGCCCCAAAGATTGGCTGTACGCCGGAGACTCT 52483 ||| || |||||| | ||| || ||| | ||||| ||||| ||||| | || || Sbjct 1185 CTCGCAATGGGCGACTATTGTCTCGATTTCAGGCAAGATCGGCTGCTCGCCGCAAACGCT 1126 Query 52484 GCGTGTCTGGGTT-CGCCAGCATGAGCGGGATACCGGGG-GCGGTGATGGAGGGCTCACC 52541 || | ||||| ||| ||| |||||| ||| | || |||| | || | ||| Sbjct 1125 GCATACTTGGGTGACGCAAGC-TGAGCGTGATGCTGGCAAGCGG----GCGGGTCCAACC 1071 Query 52542 ACCGCTGAACGTCAGCGTCTGAAAGAGCTGGAGCGTGA----AAATCGTGAACTGCGCCG 52597 |||| ||| || || | || | ||||||||| || ||| ||||| || | Sbjct 1070 ACCGATGAGCGAGCGCAGATCAAGGCGCTGGAGCGCGAGGTGAAA----GAACTTCGTCA 1015 Query 52598 CAGTAACGATATCCTTCGCCAGGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCCT 52657 ||| || ||| | || |||| || || ||||||||| |||||||| ||||||||| Sbjct 1014 GGCTAATGAGATCTTACGTAAGGCGTCAGCATATTTTGCGCAGGCGGAGCTCGACCGCCC 955 Query 52658 CTGGAAAAAATGATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGCTA 52717 ||| |||| | | | | || | | || || | ||| ||||||| ||| | Sbjct 954 ACTGAAGCGATGACGGCGTTCATCAATGACCATCGCGATCTGTATGGGGTCGAGCCGATT 895 Query 52718 TGCAGCGAACTGCATATTGCCCCGTCAACGTATTACCAC--TGTCAGCAACAGCGACATC 52775 ||||| | |||| |||||||| || || | ||| | || ||| || || ||| Sbjct 894 TGCAGGGTTCTGCCGATTGCCCCATCGACATTCTACGAGCATGACAG--ACGGCTGCATT 837 Query 52776 ATCCGGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAGAGATACAGC 52835 |||| || | | || |||| ||||| |||| |||||| ||||| ||| Sbjct 836 ATCCCGAGACCGCCCCGGCGCGTGTTCAGCGAGATGCGATCCTGAAGCCTGAGATCAAGC 777 Query 52836 GCGTATACGATGAAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTAC 52895 | || | ||| | || ||| |||| || || | || || |||| ||| || | | Sbjct 776 GGGTCTTCGAAGCGAACCACGAGGTCTATGGGGCCAAGAAGGTGTGGCACCAGATGGTGC 717 Query 52896 GGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTG 52955 ||||||| | ||||| | ||||| |||| || | ||| || || ||| Sbjct 716 GGGAAGGCTTTGCTGTGGCGCGCTGCACGGTGGAGCGCTTGATGCGGGAGCTGCAGCTTC 657 Query 52956 CCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGACCATCAGCCGGAA--AGCCGTTGCC-- 53011 ||| | || || || || | ||| ||||| || || || | ||| ||| Sbjct 656 GCGGGATCAGACGTGGCAAGAAAGCCCGCACGACTGTC--CCTGACCCATCCGC-GCCAT 600 Query 53012 GCAGGCG--ACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCT-GTGGGTG 53068 || ||| || || ||||| | ||| |||||| || || || | | | |||||| Sbjct 599 GCCCGCGTGACAAGGTGAACCGGAACTTCCAGGCAGA-CGCCCCGAACCGATTGTGGGTA 541 Query 53069 GCTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGAT 53128 ||||||| || || ||| |||||| ||||| |||||||||||||| |||| ||| Sbjct 540 TCTGATTTCACCTATGTCTCGACATGGGGCGGCTTTGTCTATGTGGCGTTTGTCATCGAT 481 Query 53129 GTGTTTGCCGGATACATTGTGGGGTGGCGGGT----CTCATCGTC-CATGGAGACGACAT 53183 || ||||| | |||||| || |||||||| | || || | || | || | | Sbjct 480 GTCTTTGCGCGCCGCATTGTTGGTTGGCGGGTCAGCCGCA-CGCCGCACGCAG----CCT 426 Query 53184 TCGTGCTGGATGCACTGGAGCAGGC 53208 ||||| ||||||| ||||||||||| Sbjct 425 TCGTGTTGGATGCTCTGGAGCAGGC 401 >seq13022 Length=660 Score = 122 bits (134), Expect = 3e-23 Identities = 236/342 (69%), Gaps = 20/342 (6%) Strand=Plus/Minus Query 50223 TGGGTGGCTGATTTTACCTGGGTAAGCACATGGCAG--GGCTTCGTTTATGTGGCGTTCA 50280 ||||| ||||| || |||| || || || || | |||||||| ||||| ||||||| Sbjct 542 TGGGTAGCTGACTTCACCTACGTCAGAACC--GCCGTCGGCTTCGTGTATGTTGCGTTCA 485 Query 50281 TCATTGATGTGTTCGCCGGATACATCGTGGGATGGCAGGTCTCATCAT---CCATGGAAA 50337 |||||||||| ||||| | |||||||| || ||| ||||||| || | ||| | Sbjct 484 TCATTGATGTCTTCGCGCGCTACATCGTTGGCTGGAAGGTCTCTTCCTCTCCCAATG--C 427 Query 50338 CAACATTCGTGCTGGATGCACTGGAGCAGGCGTTGTGGGCCCGTCGGCC--GTCCGGCAC 50395 ||| | | ||||| ||||| |||| || |||||| ||| |||| || ||| || Sbjct 426 CAAGA-TGGTGCTTGATGCTTTGGATCAAGCGTTGGCGGCGCGTCAACCAGATCC--CAA 370 Query 50396 A------ATCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACGCAGCG 50449 | |||||||| || || | ||| ||| ||| | ||| | ||||| |||| Sbjct 369 AACCCTTATCCATCATAGCGACAGAGGCGTTCAATATCTGTCGATCAAGTACACAGAGCG 310 Query 50450 GCTTAAGGAAGCCGGATTACTGGCATCAACAGGGAGTACTGGCGACTCGTATGACAACGC 50509 || ||||||||| | | | ||| || || || ||| |||||||| || Sbjct 309 CCTCAAGGAAGCCAAAATCGATCCGTCAGTCGGCAGCGTCGGTGACAGCTATGACAATGC 250 Query 50510 GATGGCTGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAAT 50551 |||||| |||| ||||| ||||| ||||| || ||||| || Sbjct 249 GATGGCCGAGACAATCAACGGTCTCTACAAGGCTGAGGTCAT 208 Score = 114 bits (126), Expect = 5e-21 Identities = 234/343 (68%), Gaps = 16/343 (5%) Strand=Plus/Minus Query 53060 CTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAG--GGCTTCGTCTATGTGGCGT 53117 || ||||| ||||| || || |||||||| || || | |||||||| ||||| |||| Sbjct 545 CTCTGGGTAGCTGACTTCACCTACGTCAGAACC--GCCGTCGGCTTCGTGTATGTTGCGT 488 Query 53118 TCATCATTGATGTGTTTGCCGGATACATTGTGGGGTGGCGGGTCTCATCGT---CCATGG 53174 ||||||||||||| || || | ||||| || || ||| |||||| || | ||| | Sbjct 487 TCATCATTGATGTCTTCGCGCGCTACATCGTTGGCTGGAAGGTCTCTTCCTCTCCCAATG 428 Query 53175 AGACGACATTCGTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACC--GTCC-- 53230 | || | ||||| ||||| |||| || ||||| ||| |||| ||| ||| Sbjct 427 CCAAGA---TGGTGCTTGATGCTTTGGATCAAGCGTTGGCGGCGCGTCAACCAGATCCCA 371 Query 53231 --GGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGC 53288 | ||||||| || || | ||| ||| ||| | ||| | |||||| ||| Sbjct 370 AAACCCTTATCCATCATAGCGACAGAGGCGTTCAATATCTGTCGATCAAGTACACAGAGC 311 Query 53289 GGCTTAAGGAAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACG 53348 | || ||||||||| | | | ||| || || || ||| |||||||| | Sbjct 310 GCCTCAAGGAAGCCAAAATCGATCCGTCAGTCGGCAGCGTCGGTGACAGCTATGACAATG 251 Query 53349 CGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAAT 53391 ||||||| |||| ||||| ||||| ||||| || ||||| || Sbjct 250 CGATGGCCGAGACAATCAACGGTCTCTACAAGGCTGAGGTCAT 208 >seq6377 Length=1126 Score = 80.6 bits (88), Expect = 1e-10 Identities = 205/310 (66%), Gaps = 9/310 (3%) Strand=Plus/Plus Query 50215 ACCAGTTGTGGGTGGCTGATTTTACCTGGGTAAGCACATGGCAGGGCTTCGTTTATGTGG 50274 ||||| | |||||| | || ||||||| || || |||| ||||| || ||||| | Sbjct 578 ACCAGCTCTGGGTGTCGGACTTTACCTTCGTGTCGACGTGGCGCGGCTTTGTCTATGTTG 637 Query 50275 CGTTCATCATTGATGTGTTCGCCGGATACATCGTGGGATGGCAGGTCTCATCATCCATGG 50334 | ||| |||| || || || | ||||| || ||| ||| || | || || Sbjct 638 CCTTCGTCATAGACACCTTTGCGAACAAGATCGTCGGCTGGAAGGCGTCGACGTCTCAGG 697 Query 50335 AAACAACATTCGTGCTGGATGCACTGGAGCAGGCGTTGTGGGCCCGTCGGCCGTCCGGCA 50394 |||| ||||||||||| || |||| |||||| | |||||||| || ||| | Sbjct 698 AAACTCAGTTCGTGCTGGACGCTTTGGAACAGGCGATCCATGCCCGTCGTCCAGCCGAAA 757 Query 50395 ---CAATCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACGCAGCGGC 50451 ||||||||| |||| || ||||| || |||||| | ||||| ||||| Sbjct 758 ATCTCATCCATCACTCTGATCGGGGATCTCAATACGTATCGATCAAGTACACCGAGCGGT 817 Query 50452 TTAAGGAAGCCGGATTACTGG---CATCAACAGGGAGTACTGGCGACTCGTATGACAACG 50508 | || ||||| |||| |||| || ||| |||||| || ||||| |||| Sbjct 818 TGGTCGATGCCGG---CCTGGAACCATCCGTCGGCAGTGTTGGCGATTCATATGATAACG 874 Query 50509 CGATGGCTGA 50518 || | ||||| Sbjct 875 CGCTTGCTGA 884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185217932324008