Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq11540 170 8e-38 seq1229 100 1e-16 seq3257 93.3 2e-14 seq2422 82.4 3e-11 >seq11540 Length=733 Score = 170 bits (188), Expect = 8e-38 Identities = 240/337 (71%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 11169 CGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTCCTGGC 11228 |||||| ||||| | |||||||||||| ||||| | ||||||| |||| |||||| | Sbjct 498 CGAGCATCTGCATCTGGCCGTTGATGTCTACCACAATCTCGGTGGTGTATACGTCCTGCC 439 Query 11229 CGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAGCCCT 11288 | || | ||||||||||||||| | |||| |||||||| || |||| ||| || | Sbjct 438 CTTCTTTATTCTGCCACTTGCGGGTTTGCAGGCGACCTTCGATATACACCTTGGAACCTT 379 Query 11289 TTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGCCACT 11348 | |||||||| || | || | ||| |||| | ||| || ||||| ||||||||||| | Sbjct 378 TACGCAGGTACTGGCCGGCCACTTCCGCCACCTTGCCGAACAGCACAACCCGGTGCCATT 319 Query 11349 CGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGCCAGAC 11408 |||| | | | |||||| ||||| || || | ||||| || ||||| Sbjct 318 CGGTTCTCGGTACCATCTGGCCAGTCTGGCGATCCTTGTAACTTTCATCGGTAGCCAGGT 259 Query 11409 TGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTTGCGTCTGGATCCTGGCCCAGAT 11468 |||| ||||| || || ||||||| | | | || |||||||||||||||| Sbjct 258 TGAGATTCACAACCGCGTTGCCATTCGGGGTATAGCGGGTATCCGGATCCTGGCCCAGAT 199 Query 11469 GGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCAT 11505 || | || ||||||||||| | || |||||||| Sbjct 198 TACCAATGAGAATTACCTTGTTAATGCCTCGTGCCAT 162 >seq1229 Length=3730 Score = 100 bits (110), Expect = 1e-16 Identities = 211/312 (68%), Gaps = 11/312 (4%) Strand=Plus/Plus Query 11204 ACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTG 11263 ||||| |||||||| | ||| || |||| ||| ||||||||||||| || || | Sbjct 1345 ACCTCAGTGCTGTATTTGTCTTGACCGTTTTGGTCCTGCCACTTGCGCGTTTCCAGTTGG 1404 Query 11264 CCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGG 11323 ||||||||||||| || |||||| || ||||| |||||| |||||| | |||| | Sbjct 1405 CCTTCGATGTAGATCTTGGAGCCTTTGCGCAGATATTGCTCTGCGACGCGGATCAGCGGC 1464 Query 11324 CC---AAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTG 11380 | ||||| | |||| ||||| ||||| || | ||| ||| | | |||| Sbjct 1465 TCAGAAAAGATCGCGACAGAATGCCATTCGGTCTTTTCACGACGCTCACCGCTGTTCTTG 1524 Query 11381 TCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTA 11440 |||||||| |||| || || | | || | | || | |||| ||||| | | Sbjct 1525 TCTTTCCAAGTTTC---AGAGGTCGCAATGCGCAGGTTGCACACCTTGCCGCCATTAGGA 1581 Query 11441 GATCTTGCG----TCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCACTCC 11496 | | |||| || || || |||| |||| |||| | ||| || |||||||| Sbjct 1582 AAGC-TGCGGACCTCGGGGTCGCGGCCAAGATTTCCGATGATGATGACTTTGTTCACGGA 1640 Query 11497 GCGTGCCATGGC 11508 || ||||||||| Sbjct 1641 GCCTGCCATGGC 1652 >seq3257 Length=1796 Score = 93.3 bits (102), Expect = 2e-14 Identities = 204/304 (67%), Gaps = 19/304 (6%) Strand=Plus/Minus Query 11201 ACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGG 11260 || || || || ||||| | || | |||||| | ||||||| |||||||| | || Sbjct 959 ACCACTTCAGTCGTGTAGCGATCATTGCCGTCGCGATCCTGCCATTTGCGGGTCTGAAGC 900 Query 11261 CTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGC 11320 |||||||||||| |||| ||||||||| |||||| | | | |||| || ||||| Sbjct 899 TGGCCTTCGATGTAAACCTTGGAGCCCTTCTTCAGGTAGTTCTCCGCGACTTTCGCCAGA 840 Query 11321 CGGCC---AAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGC 11377 | | |||| |||||| |||||||||||| || | ||| ||| || | Sbjct 839 TTGTCGTTGAAGATCACGACATTGTGCCACTCGGTCTTTTCGCGGCGCTCGCCCGTGGAC 780 Query 11378 TTGTCTTTCCAGCTTTCGCTAGTGGC------CAGACTGA--GGGAGGTGACCGCCTTTC 11429 ||||| ||||||||||| ||||| |||| ||| | ||| ||| || | Sbjct 779 TTGTCGCGCCAGCTTTCGCCGGTGGCGATGCGCAGATTGACCACGGGGTCGCCG-CTATT 721 Query 11430 CGCCCGGGGTAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGT 11489 | ||| | | | || || ||| ||||||| ||| |||||||| ||||||| Sbjct 720 CATGCGGCGCA-------CTTCCGGGTCCGCACCCAGATTGCCCACCAGGATAACCTTGT 668 Query 11490 TCAC 11493 |||| Sbjct 667 TCAC 664 >seq2422 Length=2238 Score = 82.4 bits (90), Expect = 3e-11 Identities = 118/163 (72%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 11200 CACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAG 11259 ||| || |||||| | || | ||||||||| |||| ||||||| ||||| || | | Sbjct 372 CACGACTTCGGTGGTATATTTGTCCTGGCCAGACTGGTCCTGCCATTTGCGCGTCTGCAA 431 Query 11260 GCTG-CCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCA 11318 ||| || |||||||| |||| |||||||| ||| |||||| | || | | || | Sbjct 432 -CTGACCCTCGATGTAAACCTTCGAGCCCTTCTTCAGATATTGCTCGGCCACATTCGCGA 490 Query 11319 GCCGGCCA---AAGAGCACGACCCGGTGCCACTCGGTGCGCTC 11358 | || |||| ||||| |||||||||||||||||||| Sbjct 491 GATTTTCATTAAAGATGACGACGCGGTGCCACTCGGTGCGCTC 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208457076450532