Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq9616 315 1e-80 seq15666 250 4e-61 seq10300 223 6e-53 seq2399 132 8e-26 seq9663 96.9 6e-15 seq15657 84.2 4e-11 seq13890 84.2 4e-11 >seq9616 Length=845 Score = 315 bits (348), Expect = 1e-80 Identities = 390/529 (74%), Gaps = 6/529 (1%) Strand=Plus/Plus Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || |||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||| Sbjct 26 GATGGTATGCCACTAGGTATTAGTGGAACCTTCAACTTTATGTTAGTATTCCAAGCAGAA 85 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || | ||| | ||||| |||||||| || ||| || |||| | | ||||| ||| | Sbjct 86 CACAGCATTTTAATGCATCCATTCCACATATTAGGAGTAGCAGCTGTTTTCGGAGGATCT 145 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 ||||| ||||||||| || || | || || || || || | || || ||| Sbjct 146 CTATTCAGTGCTATGCATGGATCATTGGTAACTTCATCTCTACTTGCAGAGACACTTGGA 205 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 | | |||| || | || || | |||||||| | || |||||||||| ||| Sbjct 206 TCTAACTCACTCAATTCAGGCTATATATTCGGACAGTAGGATGAGACATATAGCATATCA 265 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTA-TGCATCATTCAACAACAGCAG 212327 || |||||||||||||| |||||||| || |||||||| | | | || |||||| || Sbjct 266 GCAGCACATGGATACTTTGGTAGACTAATATTCCAGTACAGTAGC-TTTAACAACTCAAG 324 Query 212328 AAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAAC--CTCTATG 212385 ||| ||||||||||||| ||| ||||||| || || || ||||||| || ||||| | Sbjct 325 AAGCATACACTTCTTCCTAGCAGCATGGCCAGTAATAGGTATATGGTTCACCTCTCTAGG 384 Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 |||||| |||||||| || ||| ||||||| | ||||||||| ||||| |||| || Sbjct 385 AGTATCT--ACAATGGCTTTTAACTTAAATGGTCTGAACTTCAACGAATCACTTGTAGAC 442 Query 212446 GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505 || |||| | | || || |||| || | ||||| |||||| |||| |||||| Sbjct 443 TCAGAAGGTCATCTAATTAACACATGGGCCGACATACTTAATAGAGCAGACCTAGGTATG 502 Query 212506 GAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCAT 212554 ||||| ||||| || || |||||||||||||||||||| || |||||| Sbjct 503 GAAGTAATGCATGAGAGGAATGCACACAACTTCCCACTAGATCTAGCAT 551 >seq15666 Length=534 Score = 250 bits (276), Expect = 4e-61 Identities = 368/517 (71%), Gaps = 7/517 (1%) Strand=Plus/Plus Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTC-ATGTTCGTATTCCAAGCAGA 212087 || |||||||| ||||||| ||||| |||||||| ||||| |||||||||||||| Sbjct 22 GATGGTATGCCACTAGGTATTAGTGGAACCTTCAACTTTTATGTTAGTATTCCAAGCAGA 81 Query 212088 ACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGC 212147 ||| ||||| | |||||||||||||| || ||| || |||| | | || || ||| | Sbjct 82 ACACAACATTTTAATGCACCCATTCCACATATTAGGAGTAGCAGCTGTTTTTGGAGGATC 141 Query 212148 ATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGG 212207 ||||| ||||||||| || || | || || || || || | || || ||| Sbjct 142 TCTATTCAGTGCTATGCATGGATCATTGGTCACTTCATCTCTACTTGCAGAGACACTTGG 201 Query 212208 TTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGT 212267 | | |||| || | || || | | | ||| || || |||||||||| ||| Sbjct 202 ATCTAACTCACTCAATTCAGGCTATATATGTGAACAGGAGGATGAGACATATAGCATATC 261 Query 212268 TGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAG 212327 || |||||||||||||| ||||||| || |||||||| | || |||||| || Sbjct 262 AGCAGCACATGGATACTTTGGTAGACCAATATTCCAGTACGGTAGCTTTAACAACTCAAG 321 Query 212328 AAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAAC--CTCTATG 212385 ||| ||||||||||||| ||| ||||||| || || || ||||||| || ||||| | Sbjct 322 AAGCCTACACTTCTTCCTAGCAGCATGGCCAGTAATAGGTATATGGTTCACCTCTCTAGG 381 Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 | |||| || ||||| || ||| |||||| | | |||| ||||| |||| || Sbjct 382 AGCATCT--ACGATGGCTTTTAACTTAAATG--TGAGCCCTCAATGAATCACTTGTAGAC 437 Query 212446 GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505 || || | | | || || |||| || | ||||| |||||| |||| |||||| Sbjct 438 TCAGAAGATCATCTAATTAACACATGGGCCGACATACTTAATAGAGCAGACCTAGGTATG 497 Query 212506 GAAGTTATGCACGAAAGAAATGCACACAACTTCCCAC 212542 ||||| ||||| || || ||||||||| ||||||||| Sbjct 498 GAAGTAATGCATGAGAGGAATGCACACGACTTCCCAC 534 >seq10300 Length=803 Score = 223 bits (246), Expect = 6e-53 Identities = 243/321 (76%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 212236 TTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTT 212295 |||||||| || || |||||||||| ||| || |||||||||||||| |||||||| Sbjct 613 TTCGGACAGGAGGATGAGACATATAGCATATCAGCAGCACATGGATACTTTGGTAGACTA 554 Query 212296 ATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGG 212355 || ||||| || | || |||||| |||||| ||||||||||||| ||| ||||| Sbjct 553 ATATTCCAATACGGTAGCTTTAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGCATGG 494 Query 212356 CCTGTTATCTGTGTATGGTTAACCTCTATGGG--TATCTGCACAATGGCATTCAACCTAA 212413 || || || || ||||||| |||||| | || ||||| |||||| | || ||| ||| Sbjct 493 CCAGTAATAGGTATATGGTTCACCTCTCTAGGAGTATCT--ACAATGACTTTTAACTTAA 436 Query 212414 ATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGG 212473 |||| | |||||||| ||||| |||| || || |||| | | || || |||| Sbjct 435 ATGGCCTGAACTTCAATGAATCACTTGTAGACTCAGAAGGTCATCTAATTAACACATGGG 376 Query 212474 GTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACA 212533 || | ||||| |||||| |||| ||||||||||| ||||| || || ||||||||| Sbjct 375 CCGACATACTTAATAGAGCAGACCTAGGTATGGAAGTAATGCATGAGAGGAATGCACACG 316 Query 212534 ACTTCCCACTTGACTTAGCAT 212554 |||||||||| || |||||| Sbjct 315 ACTTCCCACTAGATCTAGCAT 295 >seq2399 Length=2249 Score = 132 bits (146), Expect = 8e-26 Identities = 365/551 (66%), Gaps = 10/551 (2%) Strand=Plus/Minus Query 193646 TGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTA 193705 ||| || || ||||| | ||| |||||||||||||| || |||||| | || ||||| Sbjct 995 TGAAATATACAATCTCGCTGCACAAAGTCATGTTAAGGTAAGCTTTGAAACACCCGAGTA 936 Query 193706 TACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGG 193765 |||| | ||| ||||| | ||||| || || | || |||||| |||| || | Sbjct 935 TACTGCAAATTCAGATGCCATCGGAACACTAAGGGTGCTGGAAGCAATTCGGATCCT--T 878 Query 193766 AATGGAGAAAG--ATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTT 193823 ||| ||| || || || | || || || || ||| |||||| || || | |||| Sbjct 877 AATTTAGAGAGCCGCGTACGTTTTTACCAAGCCTCAACCTCCGAACTCTACGGCGATGTT 818 Query 193824 CTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCA 193883 | | || || | | ||| || |||||| ||||| | ||| || || | ||| Sbjct 817 CGCGAAACGCCCCAGACCGAATTGACGCCATTTTATCCAAGGAGTCCGTACGGCGCAGCC 758 Query 193884 AAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGT 193943 ||| |||| | ||||||| | || ||||| || |||| || |||| ||| | Sbjct 757 AAGGCATATGCGTTCTGGATCACCGTTAACTATCGCGAAGCATACGGGATCCATGCTTCT 698 Query 193944 TCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAG 194003 || ||| | ||||| || || |||| |||| || || |||||||| || || Sbjct 697 AACGGCATTTTATTCAACCATGAGGGCCCAACGCGAGGCGAAACGTTTGTAACACGGAAA 638 Query 194004 ATTACACAAG-GTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAA 194062 || || | | | || | | || || | || ||| | || | ||||||||| Sbjct 637 ATCACTCGCGCGGTTGCCGCAATTCACT-TGGGGCACCAGTCAAAACTGTTTCTTGGTAA 579 Query 194063 TCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAAT 194122 ||| || | ||| | |||||||| || ||| |||||||| |||| |||||| || Sbjct 578 TCTAGATTCGAAGCGCGATTGGGGGCATGCACGCGATTATGTGGAAGGTATGTGGCGTAT 519 Query 194123 GTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGA-ACA-GTATTCTGTT 194180 | || ||||| | ||||||||||| ||| | || || || || ||| | | | ||| Sbjct 518 CGTCCAGCAGGACAAGCCCGATGATTACGTGCTGGCCACCGGCGAGACACGCA--CAGTT 461 Query 194181 AGAGACTTTGT 194191 |||| ||||| Sbjct 460 CGAGAGTTTGT 450 >seq9663 Length=843 Score = 96.9 bits (106), Expect = 6e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 211977 AGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTAT 212036 |||||| | || |||||| |||||||||| | || || || ||| || ||||| Sbjct 207 AGCAGCATCAGCAGTATTCATTGTTTACCCTATAGGACAAGGAAGTTTCAGTGATGGTAT 266 Query 212037 GCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACAT 212096 ||| ||||||| ||||| || ||||| | |||||||| |||||| ||||| ||||| Sbjct 267 GCCACTAGGTATTAGTGGAACCTTTAACTTTACGTTCGTATGCCAAGCGGAACACAACAT 326 Query 212097 CCTTATGCACCCATTCCA 212114 || ||||||||||||| Sbjct 327 GCTCGTGCACCCATTCCA 344 >seq15657 Length=537 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 211977 AGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTAT 212036 |||||| | || |||||| |||||||||| | || || || ||| || ||||| Sbjct 22 AGCAGCATCAGCAGTATTCATTGTTTACCCTATAGGACAAGGAAGTTTCAGTGATGGTAT 81 Query 212037 GCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACA 212090 ||| ||||||| ||||| |||||||| ||||| ||||||||||||||||| Sbjct 82 GCCACTAGGTATTAGTGGAACCTTCAACTTTATGTTAGTATTCCAAGCAGAACA 135 >seq13890 Length=621 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 212046 TATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCA 212105 |||| | ||||| || ||||| ||||| ||||||||||||||||| ||||| || |||| Sbjct 595 TATAGCCGGAACCTTTAACTTTATGTTAGTATTCCAAGCAGAACACAACATGCTCGTGCA 536 Query 212106 CCCATTCCATA 212116 ||||||||||| Sbjct 535 CCCATTCCATA 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807387864468120