Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq8042 349 4e-91 seq9616 219 5e-52 seq15666 170 2e-37 seq10300 141 1e-28 seq15657 87.8 2e-12 >seq8042 Length=962 Score = 349 bits (386), Expect = 4e-91 Identities = 630/910 (69%), Gaps = 21/910 (2%) Strand=Plus/Minus Query 167408 GGCACGACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGT 167467 ||||| || ||||| || || ||| || || || ||||| ||| | || || Sbjct 962 GGCACAACATTTGTCACAAGTTGGCTAACACATGGTTTGGCAAGCTCATACTTAGAAGGA 903 Query 167468 GCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTT 167527 ||| ||| | || |||||||| || || ||| | ||||| |||||||| || Sbjct 902 TGTAACTTTTTAACAGCAGCAGTTAGCACACCAGCTAATAGCATGGGACATTCTCTACTA 843 Query 167528 CTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTC 167587 ||| | ||||| || || | || || |||| | || || || ||| ||| ||| Sbjct 842 CTATTGTGGGGACCAGAAGCACAAGGTTATTTTACAAGATGAA--CA-CTTATGGG-CTC 787 Query 167588 T----GGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTC-GGC 167642 | || | || | | | ||| | |||||| | ||||| ||| || || ||| Sbjct 786 TTTATGGACCTTCATTACTTTTCACTCAATCTTTGCAGTTATAGGCTTT-TGTTTAAGGC 728 Query 167643 AATTTGAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTC 167702 | ||||||||| || |||| |||| ||||| |||||||| | || || | || | Sbjct 727 AGTTTGAGATAGCCAGCTTAGTCAGTATACGTCCGTACAATGCTCTAGCCTTCACAGGCC 668 Query 167703 CGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCT 167762 | || | | | || || || |||| || ||| | || || ||| |||||||| Sbjct 667 CTATAATACTATACATATCAGTGTTCGTCATTTACCCTTTAGGTCAATCCTCTTGGTTCT 608 Query 167763 TTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCC 167822 ||||||| | ||| |||||||| || || || ||||| ||||||||||| || || | Sbjct 607 TTGCACCTAGCTATGGAGTTGCAGCCATCTTCAGGTTCCTCCTATTCCTACAAGGCTTTC 548 Query 167823 ATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCAT 167882 | || ||||| || ||||| ||||||||||||||| | || || ||| | || | || Sbjct 547 ACAATTGGACTCTAAACCCATTCCATATGATGGGAATAGCAGGAATCTTGGGAGCAGCTC 488 Query 167883 TGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAG 167942 | | || || || ||||||| ||||||| || ||| | ||| |||||||| |||| Sbjct 487 TTTTATCAGCTATACATGGTGCCACAGTAGTTAACACTATATATCAAGATGGT---CAAG 431 Query 167943 CAAAC---ACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCA 167999 | || || |||| | |||| | | || || ||||| ||||| || ||| | | Sbjct 430 CTTACACAACCTTCAGATCATTCTCTCCAACGCAACCTGAGGAGACTTACTCTATGCTAA 371 Query 168000 CTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGC 168059 | ||||| |||||||||||||| | | || | || || ||||||| | ||| | | Sbjct 370 CAGCTAATAGATTCTGGTCTCAAGTACTCGGAGTAGCATTTTCCAATAAGAGATGGCTTC 311 Query 168060 ACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCG 168119 ||||||| | || || || || || ||| | ||||| |||||| || || || | Sbjct 310 ACTTCTTCCTACTATTAGTACCAGTAGCAGGAATGTGGACCTCTTCTATAGGAATAATAG 251 Query 168120 GTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGG 168179 | || ||| | || ||| | || ||||||||| | ||||||| ||| | || ||||||| Sbjct 250 GACTAGCATTCAACCTTAGAGCATATGACTTTATATCTCAGG-AGTAAAGGCTGCAGAGG 192 Query 168180 ATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCT 168239 | ||||||||||| || |||||||| || ||||| || || |||||||| ||||| | Sbjct 191 ACCCAGAGTTTGAGACATTCTATACTAAGAACATACTACTTAATGAAGGTATCCGTTTAT 132 Query 168240 GGATGGC--TCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCC 168297 ||||||| |||| ||| ||||| ||||| ||||| |||||| || |||||| | || Sbjct 131 GGATGGCAGTCCA--AGAACAACCTCATGAGAACTTCCAATTCCCTGAGGAAGTACTTCC 74 Query 168298 AAGAGGCAAC 168307 |||||||||| Sbjct 73 AAGAGGCAAC 64 >seq9616 Length=845 Score = 219 bits (242), Expect = 5e-52 Identities = 376/544 (69%), Gaps = 4/544 (1%) Strand=Plus/Plus Query 166495 GGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATG 166554 || ||||| |||| ||| | ||||| || ||||| ||||| |||||||||| ||| Sbjct 8 GGACAAGGAAGTTTCAGTGATGGTATGCCACTAGGTATTAGTGGAACCTTCAACTTTATG 67 Query 166555 CTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCA 166614 | || ||||||||||| |||| ||| | ||||| || ||||| || | || |||||| Sbjct 68 TTAGTATTCCAAGCAGAACACAGCATTTTAATGCATCCATTCCACATATTAGGAGTAGCA 127 Query 166615 GGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTC 166674 | ||| ||||| || || || ||| || ||||| || | || ||||| || || Sbjct 128 GCTGTTTTCGGAGGATCTCTATTCAGTGCTATGCATGGATCATTGGTAACTTCATCTCTA 187 Query 166675 GTCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAA 166734 | ||||| || | || | || | || | || || | || || || | || Sbjct 188 CTTGCAGAGACACTTGGATCTAACTCACTCAATTCAGGCTATATATTCGGACAGTAGGAT 247 Query 166735 GAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCT 166794 ||||| || | ||| || || ||||| ||||| ||| | || || ||||| ||| | Sbjct 248 GAGACATATAGCATATCAGCAGCACATGGATACTTTGGTAGACTAATATTCCAGTACAGT 307 Query 166795 TCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATC 166854 ||| |||||||| | | ||||||||||| ||||||||||| || | ||||| Sbjct 308 AGCTTTAACAACTCAAGAAGCATACACTTCTTCCTAGCAGCATGGCCAGTAATAGGTATA 367 Query 166855 TGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAAC 166914 ||||| || |||| || || || ||||| || ||| | || ||| | ||||||||| Sbjct 368 TGGTTCACCTCTCTAGGAGTATCTACAATGGCTTTTAACTTAAATGGTCTGAACTTCAAC 427 Query 166915 CAGTCCATCATCGATGGTCAG--GGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACC 166972 | || | | || |||| |||| | | | ||||| ||||| || | || || Sbjct 428 GAATCACTTGTAGA--CTCAGAAGGTCATCTAATTAACACATGGGCCGACATACTTAATA 485 Query 166973 GTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATC 167032 | || | || ||||||||||||||||| ||| | ||||| ||||||||||| || |||| Sbjct 486 GAGCAGACCTAGGTATGGAAGTAATGCATGAGAGGAATGCACACAACTTCCCACTAGATC 545 Query 167033 TTGC 167036 | || Sbjct 546 TAGC 549 >seq15666 Length=534 Score = 170 bits (188), Expect = 2e-37 Identities = 360/533 (68%), Gaps = 7/533 (1%) Strand=Plus/Plus Query 166495 GGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTAC-AT 166553 || ||||| |||| ||| | ||||| || ||||| ||||| |||||||||| || Sbjct 4 GGACAAGGAAGTTTCAGTGATGGTATGCCACTAGGTATTAGTGGAACCTTCAACTTTTAT 63 Query 166554 GCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGC 166613 | | || ||||||||||| |||||||| | |||||||| ||||| || | || ||||| Sbjct 64 GTTAGTATTCCAAGCAGAACACAACATTTTAATGCACCCATTCCACATATTAGGAGTAGC 123 Query 166614 AGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCT 166673 || ||| || || || || || ||| || ||||| || | || ||||| || || Sbjct 124 AGCTGTTTTTGGAGGATCTCTATTCAGTGCTATGCATGGATCATTGGTCACTTCATCTCT 183 Query 166674 CGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGA 166733 | ||||| || | || | || | || | || || | | || || || || Sbjct 184 ACTTGCAGAGACACTTGGATCTAACTCACTCAATTCAGGCTATATATGTGAACAGGAGGA 243 Query 166734 AGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 166793 ||||| || | ||| || || ||||| ||||| ||| | | || ||||| |||| Sbjct 244 TGAGACATATAGCATATCAGCAGCACATGGATACTTTGGTAGACCAATATTCCAGTACGG 303 Query 166794 TTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTAT 166853 | ||| |||||||| | || ||||||||||| ||||||||||| || | ||||| Sbjct 304 TAGCTTTAACAACTCAAGAAGCCTACACTTCTTCCTAGCAGCATGGCCAGTAATAGGTAT 363 Query 166854 CTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAA 166913 ||||| || |||| || | || ||||| || ||| | || | | | |||| Sbjct 364 ATGGTTCACCTCTCTAGGAGCATCTACGATGGCTTTTAACTTAAATG--TGAGCCCTCAA 421 Query 166914 CCAGTCCATCATCGATGGTCAG--GGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAAC 166971 | || | | || |||| | || | | | ||||| ||||| || | || || Sbjct 422 TGAATCACTTGTAGA--CTCAGAAGATCATCTAATTAACACATGGGCCGACATACTTAAT 479 Query 166972 CGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCC 167024 | || | || ||||||||||||||||| ||| | ||||| ||| ||||||| Sbjct 480 AGAGCAGACCTAGGTATGGAAGTAATGCATGAGAGGAATGCACACGACTTCCC 532 >seq10300 Length=803 Score = 141 bits (156), Expect = 1e-28 Identities = 224/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 166720 TTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTG 166779 || || || || || ||||| || | ||| || || ||||| ||||| ||| | || Sbjct 613 TTCGGACAGGAGGATGAGACATATAGCATATCAGCAGCACATGGATACTTTGGTAGACTA 554 Query 166780 ATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGG 166839 || |||||||||| | ||| |||||||| | || ||||||||||| ||||||||| Sbjct 553 ATATTCCAATACGGTAGCTTTAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGCATGG 494 Query 166840 CCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAAC 166899 || || | ||||| ||||| || |||| || || || ||| | || ||| | || Sbjct 493 CCAGTAATAGGTATATGGTTCACCTCTCTAGGAGTATCTACAATGACTTTTAACTTAAAT 434 Query 166900 GGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG--GGTCGTGTGCTCAACACTTGGG 166957 || | |||||||| | || | | || |||| |||| | | | ||||| |||| Sbjct 433 GGCCTGAACTTCAATGAATCACTTGTAGA--CTCAGAAGGTCATCTAATTAACACATGGG 376 Query 166958 CAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACA 167017 | || | || || | || | || ||||||||||||||||| ||| | ||||| ||| Sbjct 375 CCGACATACTTAATAGAGCAGACCTAGGTATGGAAGTAATGCATGAGAGGAATGCACACG 316 Query 167018 ACTTCCCTCTGGATCTTGC 167036 ||||||| || ||||| || Sbjct 315 ACTTCCCACTAGATCTAGC 297 >seq15657 Length=537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 166461 AGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAAT 166520 ||||||||| ||||| ||| | || || ||| | || ||||| |||| ||| | || Sbjct 22 AGCAGCATCAGCAGTATTCATTGTTTACCCTATAGGACAAGGAAGTTTCAGTGATGGTAT 81 Query 166521 GCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACA 166576 ||| || ||||| ||||| |||||||||| ||| | || ||||||||||| |||| Sbjct 82 GCCACTAGGTATTAGTGGAACCTTCAACTTTATGTTAGTATTCCAAGCAGAACACA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567114462439200