Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq4484 181 3e-41 seq2 122 3e-23 seq5869 107 6e-19 seq2283 102 2e-17 seq1950 96.9 1e-15 seq14021 91.5 4e-14 >seq4484 Length=1427 Score = 181 bits (200), Expect = 3e-41 Identities = 311/444 (70%), Gaps = 17/444 (4%) Strand=Plus/Plus Query 42698 TCGAACACGGTCTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATG 42757 ||||| |||||||||||| | |||||| || | ||||||||||||| | ||| Sbjct 23 TCGAAATTGGTCTCGCCGCCCACCGTCGGCACGCCAACGCAGTTGCCGTAGCCACCAATG 82 Query 42758 CCGCTGGTGACGCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGC 42817 || ||| || ||| ||| | | | || | |||| | || |||| |||||| Sbjct 83 CCAGCGGTCACACCGGCCACCAGCTGGCGGGTTTTCGGGTGCTTGGGATCGCCAAAGCGC 142 Query 42818 AGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCG 42877 || || | ||| | || || ||||| |||||||||| || || ||||| | |||||| Sbjct 143 AGCGCATTCATCAGTGCCACGGGGCGCGCGCCCATGGTGAAGACATCGCGCAGAATGCCG 202 Query 42878 CCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCC 42937 |||||||| |||||||||||||| ||||||||||||| |||||||||||| || ||| Sbjct 203 CCCACACCGGTCGCCGCGCCCTGATAGGGCTCGATGAAGCTGGGGTGGTTGTGGCTTTCC 262 Query 42938 GCCTTGAACGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATC 42997 ||||| | ||||| || ||||||| |||| ||||||||||| | ||| | Sbjct 263 ATTTTGAAGATCGCCGCCTGACCATCGCCGATATCGACAACGCCCGCGTTTTCGCCCGGC 322 Query 42998 CCGACCATGAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAG 43057 || |||| | | | | || || || || ||| ||| || | || | Sbjct 323 CCATAGATGA--CCTTGTCACCGCTGGT-CGGGAATTTC-GCCAGA-----TGCAG---G 370 Query 43058 AGCTTGCTCGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCG 43117 || | |||||||||||||| ||||||||||||||||||||| | || | ||||| Sbjct 371 CGCGAG---GACTTGTAGGAGCAATGCTCCGACCACATCACCGAGAAGATGCCGAGCTC- 426 Query 43118 CCCGAGGTGGGGCG-GCGGCCGAG 43140 | | |||| |||| |||||| || Sbjct 427 CACCAGGTTCGGCGCGCGGCCCAG 450 >seq2 Length=147547 Score = 122 bits (134), Expect = 3e-23 Identities = 199/284 (70%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 42665 GCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCGCCGATGTTC 42724 ||||| ||||| |||| | | || ||||||||| | ||||| ||||| | Sbjct 71845 GCGTTCACCAGGCAATTGTCATTGTACCGGGCATCGAAATTGACTTCGCCTCCGATCGTT 71786 Query 42725 GGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTGCACGACCCGC 42784 || | |||| ||||||||| ||| || ||||| |||||| ||| | | Sbjct 71785 GGTACGCCGAAGCAGTTGCCATAGCCGCCAATGCCTTCCACGACGCCAGACACAAT--GT 71728 Query 42785 GCCGTGTCGGGGTCGT---CGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGG 42841 | || || | | |||| | | || ||||||||||| || | |||| | ||||| ||| Sbjct 71727 GGCGGGT-GCGTTCGTTCTCAGGGGCCCCGAAGCGCAGTGCATTCATGGCGGCGACAGGG 71669 Query 42842 CGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGG 42901 || |||||||||| || || || || | |||||||| ||||| || |||||||| | Sbjct 71668 CGCGCGCCCATGGTGAAGACATCACGCAAAATGCCGCCAACACCGGTTGCCGCGCCTTCA 71609 Query 42902 AAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAA 42945 |||| |||||| |||||||||||||| |||||| |||||| Sbjct 71608 TAGGGAGAGATGAAGGAGGGGTGGTTGTGGCTCTCCATCTTGAA 71565 >seq5869 Length=1192 Score = 107 bits (118), Expect = 6e-19 Identities = 140/191 (73%), Gaps = 7/191 (4%) Strand=Plus/Plus Query 42807 CGCCGAAGCGCAGGGCGTCCATGACC---GCGACCGGGCGAGCGCCCATGGAGATGATGT 42863 |||| ||||| ||||| | ||||| || | |||||| |||||||| | || || | Sbjct 487 CGCCAAAGCGTAGGGCAT---TGACCAGTGCAATCGGGCGCGCGCCCATCGTGAAGACAT 543 Query 42864 CGCGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGT 42923 |||| | || |||||||| || || || || || || | |||||||| | || |||| Sbjct 544 CGCGCAGAATACCGCCCACGCCAGTGGCAGCACCTTGATAAGGCTCGATATATGACGGGT 603 Query 42924 GGTTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCG 42983 ||||||| || ||| |||||| || | ||| ||| ||||| | ||||| ||||||| Sbjct 604 GGTTGTGGCTTTCCATCTTGAAGATGGCGGCCTGTCCGTCGCCAATATCGATAACGCCCG 663 Query 42984 CGTTCT-GCCC 42993 | |||| |||| Sbjct 664 CATTCTCGCCC 674 >seq2283 Length=2332 Score = 102 bits (112), Expect = 2e-17 Identities = 190/279 (68%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 ||||||||| | | | || | |||| |||||||| || || | ||| | || Sbjct 1685 CTCGCCGCCCACGGTGGGGACGCCGAAACAGTTGCCATACCCGCCAACGCCTTCGACCAC 1744 Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828 || ||||| | | | ||| | ||||| ||| | || |||| ||| |||| ||| Sbjct 1745 ACCATGCACCAGCTGGCGCGTCTTGGGGTGGTCTTTTTCCCCAAAGCTCAGCGCGTTCAT 1804 Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888 |||| | || || |||||||||| || | ||| || | ||| ||||| || || || Sbjct 1805 CGCCGCAATGGGACGCGCGCCCATGGTGAACACGTCACGAAGGATACCGCCAACCCCGGT 1864 Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948 ||| || || ||| | || ||||| | || ||||||||||| |||||| |||||| Sbjct 1865 CGCTGCCCCTTGGTACGGTTCGATATAAGATGGGTGGTTGTGGCTCTCCATCTTGAAGAC 1924 Query 42949 GACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTT 42987 |||||| || ||||| | || | || |||||||| Sbjct 1925 CACCGCCTGACCGTCGCCAATATCCACCACACCCGCGTT 1963 >seq1950 Length=2612 Score = 96.9 bits (106), Expect = 1e-15 Identities = 200/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCT- 42710 |||| | || | ||||| ||||| |||| | | ||| | || | |||| ||| || Sbjct 1111 GCCCGCGGCGAACGCGTTCACCAGGCAATTGCCGTTATAAGCTGCGTGGAAC-CGGACTT 1053 Query 42711 CGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGC 42770 ||||||| | | | |||| || | ||| ||||||||| || || ||| | ||||| Sbjct 1052 CGCCGCCAACGGTTGGCACGCCAAAGCAATTGCCGTAGCCGCCGACGCCTTCGACGACGC 993 Query 42771 CGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGA 42830 |||| || | | || | | ||| | | |||| || || |||| ||| Sbjct 992 CGTGAACCAATTGGCGGGTCTTGTGGTGTGCAGGTTCGCCAAACGATAGCGCGTTCATCG 933 Query 42831 CCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCG 42890 | || | |||||| |||||||| | | | ||| || | ||||||||| || || |||| Sbjct 932 CGGCAATCGGGCGGGCGCCCATTGTAAACACGTCCCGCAGGATGCCGCCAACGCCGGTCG 873 Query 42891 CCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAA 42945 | || || ||| |||| || ||| | || ||||||||||| || ||| |||||| Sbjct 872 CAGCACCTTGGTAGGGTTCAATGTAAGACGGGTGGTTGTGGCTTTCCATCTTGAA 818 >seq14021 Length=612 Score = 91.5 bits (100), Expect = 4e-14 Identities = 167/241 (69%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 41575 GGTCTGGTTGTAGAACGAGACGTTCCCGCCCG---TGACCGGGGTGCCCAGGGCGTAGCA 41631 ||||| ||| |||| |||||| || ||||| | ||||| | |||| || ||| Sbjct 605 GGTCTCGTTATAGAGCGAGACATT---GCCCGAAATCACCGGATAGTCCAGCGCAGTGCA 549 Query 41632 GCCGTCGGCGAGCCCGTCCAC-CGTCTGACCGAACTGCCACATGACCTCGGGATTCTCCG 41690 | | ||||| | || |||| | | ||| ||| |||| ||||| ||| || || || | Sbjct 548 GGCCTCGGCCATGCCTTCCAGGCAGCCGAC-GAATTGCCCCATGATCTCCGGTTTTTCAG 490 Query 41691 GGGAGCCGAAGTTCAGGCAGTCGGTGACCGCAGTGGGCACGGCGCCGGTGACCGCGACGT 41750 || ||||||||||||||||| ||||| || ||| ||||||||| ||| | || Sbjct 489 GGTTGCCGAAGTTCAGGCAGTTGGTGATGGCCAGCGGCGTTGCGCCGGTGGCCGTAATGT 430 Query 41751 TGCGGTAGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCGAGCTGGCAGTAGC 41810 |||| |||| || |||| || ||| |||| || ||||||| | ||| |||| Sbjct 429 TGCGATAGGTTTCAGCGACAGCCTGCTTGCCGCCTTCGACCGGGTCGGCCCTGCAATAGC 370 Query 41811 G 41811 | Sbjct 369 G 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148217217418198