Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq8042 334 9e-87 seq9616 239 6e-58 seq15666 190 3e-43 seq10300 167 3e-36 seq433 91.5 2e-13 seq9045 82.4 9e-11 >seq8042 Length=962 Score = 334 bits (370), Expect = 9e-87 Identities = 496/697 (71%), Gaps = 7/697 (1%) Strand=Plus/Plus Query 6268 GTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCCACTGG 6327 |||||||||||| | |||||| ||||| ||| ||||| ||||| ||||| || ||| Sbjct 64 GTTGCCTCTTGGAAGTACTTCCTCAGGGAATTGGAAGTTCTCATGAGGTTGTTCT--TGG 121 Query 6328 --TGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTCTCG 6385 ||||||||| ||| | ||||||||| | ||| |||||||| |||||||| ||||| Sbjct 122 ACTGCCATCCATAAACGGATACCTTCATTAAGTAGTATGTTCTTAGTATAGAATGTCTCA 181 Query 6386 AACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGGTTA 6445 |||||||| ||||| || || | | ||| || || | ||||||||| ||||||||||| Sbjct 182 AACTCTGGGTCCTCTGCAGCCTTTA-CTCCTGAGATATAAAGTCATATGCTCTAAGGTTG 240 Query 6446 AGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAACAGC 6505 | ||| || || || || || || ||||||||| | || || || || || || Sbjct 241 AATGCTAGTCCTATTATTCCTATAGAAGAGGTCCACATTCCTGCTACTGGTACTAATAGT 300 Query 6506 ATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAAA 6565 | ||||| || ||||| | ||||||| || || | || | | ||||||||||| Sbjct 301 AGGAAGAAGTGAAGCCATCTCTTATTGGAAAATGCTACTCCGAGTACTTGAGACCAGAAT 360 Query 6566 CGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAA 6625 | |||||| || | ||| || || |||||||| ||| || || || | |||| Sbjct 361 CTATTAGCTGTTAGCATAGAGTAAGTCTCCTCAGGTTGCGTTGGAGAGAATGATCTGAAG 420 Query 6626 GTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCA 6685 || | | || |||||||| | | | ||| || |||| || ||||| || ||||| Sbjct 421 GTTGTGTAAGCTTGACCATCTTGATATATAGTGTTAACTACTGTGGCACCATGTATAGCT 480 Query 6686 CAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTC 6745 | | | ||| | || ||||| ||||||| ||||||||||| || ||||| || ||| Sbjct 481 GATAAAAGAGCTGCTCCCAAGATTCCTGCTATTCCCATCATATGGAATGGGTTTAGAGTC 540 Query 6746 CAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGAC 6805 || ||||| ||||| |||||||| || | ||| | ||| || |||||||| ||| | Sbjct 541 CAATTGTGAAAGCCTTGTAGGAATAGGAGGAACCTGAAGATGGCTGCAACTCCATAGCTA 600 Query 6806 GGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACA 6865 || |||||||||||| ||| || || | ||| || |||| || || || | | | Sbjct 601 GGTGCAAAGAACCAAGAGGATTGACCTAAAGGGTAAATGACGAACACTGATATGTATAGT 660 Query 6866 GCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGCGATC 6925 || || || | || || | |||||||| ||||| |||| ||||| | || ||| Sbjct 661 ATTATAGGGCCTGTGAAGGCTAGAGCATTGTACGGACGTATACTGACTAAGCTGGCTATC 720 Query 6926 TCAAACTGCC-GAAGCATGAAACCTATAAGGGCAAAG 6961 |||||||||| || || || ||||||| |||||| Sbjct 721 TCAAACTGCCTTAAACA-AAAGCCTATAACTGCAAAG 756 >seq9616 Length=845 Score = 239 bits (264), Expect = 6e-58 Identities = 378/542 (70%), Gaps = 0/542 (0%) Strand=Plus/Minus Query 7538 GCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCA 7597 || || || || ||||||||||| ||||| | ||| ||||| |||||||| || || | Sbjct 549 GCTAGATCTAGTGGGAAGTTGTGTGCATTCCTCTCATGCATTACTTCCATACCTAGGTCT 490 Query 7598 GCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGAC 7657 || | || || | ||| ||||| ||||| | | | |||||| || | | || Sbjct 489 GCTCTATTAAGTATGTCGGCCCATGTGTTAATTAGATGACCTTCTGAGTCTACAAGTGAT 430 Query 7658 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAAC 7717 | ||||||||| | ||| || | ||| || ||||| || || || |||| |||||| Sbjct 429 TCGTTGAAGTTCAGACCATTTAAGTTAAAAGCCATTGTAGATACTCCTAGAGAGGTGAAC 370 Query 7718 CAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAAC 7777 || || || | |||||||||||||| ||||||||||| | | |||||||| || Sbjct 369 CATATACCTATTACTGGCCATGCTGCTAGGAAGAAGTGTATGCTTCTTGAGTTGTTAAAG 310 Query 7778 GAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTC 7837 | ||| ||||| || || | |||||||||||| || || || ||| | || ||| Sbjct 309 CTACTGTACTGGAATATTAGTCTACCAAAGTATCCATGTGCTGCTGATATGCTATATGTC 250 Query 7838 TCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGA 7897 || || | || ||||| |||| || | || | || | ||| || || || | Sbjct 249 TCATCCTACTGTCCGAATATATAGCCTGAATTGAGTGAGTTAGATCCAAGTGTCTCTGCA 190 Query 7898 ACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACA 7957 | ||||| || ||||| | || |||||||| |||||||| ||||| || || || ||| Sbjct 189 AGTAGAGATGAAGTTACCAATGATCCATGCATAGCACTGAATAGAGATCCTCCGAAAACA 130 Query 7958 CCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACA 8017 | || || || | |||||||| || ||||| | ||| |||| ||||||||||| || Sbjct 129 GCTGCTACTCCTAATATGTGGAATGGATGCATTAAAATGCTGTGTTCTGCTTGGAATACT 70 Query 8018 AGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGA 8077 | ||| ||||||| || ||| || || || |||||| | ||| |||| ||||| Sbjct 69 AACATAAAGTTGAAGGTTCCACTAATACCTAGTGGCATACCATCACTGAAACTTCCTTGT 10 Query 8078 CC 8079 || Sbjct 9 CC 8 >seq15666 Length=534 Score = 190 bits (210), Expect = 3e-43 Identities = 362/531 (68%), Gaps = 3/531 (1%) Strand=Plus/Minus Query 7550 GGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGC 7609 ||||||| ||| ||||| | ||| ||||| |||||||| || || | || | || || Sbjct 532 GGGAAGTCGTGTGCATTCCTCTCATGCATTACTTCCATACCTAGGTCTGCTCTATTAAGT 473 Query 7610 ACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTG 7669 | ||| ||||| ||||| | | | || ||| || | | || | |||| | Sbjct 472 ATGTCGGCCCATGTGTTAATTAGATGATCTTCTGAGTCTACAAGTGATTCATTGAGGGCT 413 Query 7670 AAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACA 7729 | | || | ||| || ||||| || | || |||| |||||||| || || | Sbjct 412 CA--CATTTAAGTTAAAAGCCATCGTAGATGCTCCTAGAGAGGTGAACCATATACCTATT 355 Query 7730 ACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGG 7789 |||||||||||||| ||||||||||| || | |||||||| || | |||| ||| Sbjct 354 ACTGGCCATGCTGCTAGGAAGAAGTGTAGGCTTCTTGAGTTGTTAAAGCTACCGTACTGG 295 Query 7790 AAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGA 7849 || || | | |||||||||||| || || || ||| | || ||||| || || || Sbjct 294 AATATTGGTCTACCAAAGTATCCATGTGCTGCTGATATGCTATATGTCTCATCCTCCTGT 235 Query 7850 CCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAG 7909 | | |||| || | || | || | ||| || || || || ||||| || Sbjct 234 TCACATATATAGCCTGAATTGAGTGAGTTAGATCCAAGTGTCTCTGCAAGTAGAGATGAA 175 Query 7910 GTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCC 7969 || || | || |||||||| |||||||| ||||| || ||||| ||| | || || || Sbjct 174 GTGACCAATGATCCATGCATAGCACTGAATAGAGATCCTCCAAAAACAGCTGCTACTCCT 115 Query 7970 AGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCAT-GTAGTT 8028 | |||||||| |||||||| | |||||||| ||||||||||| || | ||| |||| Sbjct 114 AATATGTGGAATGGGTGCATTAAAATGTTGTGTTCTGCTTGGAATACTAACATAAAAGTT 55 Query 8029 GAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACC 8079 ||| || ||| || || || |||||| | ||| |||| ||||| || Sbjct 54 GAAGGTTCCACTAATACCTAGTGGCATACCATCACTGAAACTTCCTTGTCC 4 >seq10300 Length=803 Score = 167 bits (184), Expect = 3e-36 Identities = 286/414 (69%), Gaps = 1/414 (0%) Strand=Plus/Plus Query 7538 GCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCA 7597 || || || || ||||||| ||| ||||| | ||| ||||| |||||||| || || | Sbjct 297 GCTAGATCTAGTGGGAAGTCGTGTGCATTCCTCTCATGCATTACTTCCATACCTAGGTCT 356 Query 7598 GCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGAC 7657 || | || || | ||| ||||| ||||| | | | |||||| || | | || Sbjct 357 GCTCTATTAAGTATGTCGGCCCATGTGTTAATTAGATGACCTTCTGAGTCTACAAGTGAT 416 Query 7658 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAAC 7717 | |||||||| | || || | ||| || | ||| || || || |||| |||||| Sbjct 417 TCATTGAAGTTCAGGCCATTTAAGTTAAAAGTCATTGTAGATACTCCTAGAGAGGTGAAC 476 Query 7718 CAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAAC 7777 || || || | |||||||||||||| ||||||||||| || | |||||||| || Sbjct 477 CATATACCTATTACTGGCCATGCTGCTAGGAAGAAGTGTAGACTTCTTGAGTTGTTAAAG 536 Query 7778 GAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTC 7837 | |||||||||| || || | |||||||||||| || || || ||| | || ||| Sbjct 537 CTACCGTATTGGAATATTAGTCTACCAAAGTATCCATGTGCTGCTGATATGCTATATGTC 596 Query 7838 TCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGA 7897 || || || || ||||| |||| || | || | || | ||| || || || | Sbjct 597 TCATCCTCCTGTCCGAATATATAGCCTGAATTGAGTGAGTTAGATCCAAGTGTCTCCGCA 656 Query 7898 ACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCA 7951 | || || || ||||| | || |||||||| |||||||| ||||| || ||| Sbjct 657 AGTAG-GATGAAGTTACCAATGATCCATGCATAGCACTGAATAGAGATCCTCCA 709 >seq433 Length=8178 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 31214 TCGGGGTGATAGGATTCGAACCTACGGCATCCGCCTCCCAAAGACGGCGCTCTACCAAGC 31273 || |||||| |||||| |||||| || | || ||| ||||||||| |||||||||||||| Sbjct 513 TCAGGGTGACAGGATTTGAACCTGCGACTTCGGCCACCCAAAGACCGCGCTCTACCAAGC 572 Query 31274 TGAGCTACACCCCGA 31288 |||||||||||| || Sbjct 573 TGAGCTACACCCTGA 587 >seq9045 Length=882 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 32009 TGGCGACTCAAGTAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCC 32068 ||||||| | | ||||||||||||| |||||| | ||||||||||| | |||||||||| Sbjct 734 TGGCGACCCCTGCAGGATTCGAACCTGCGACCGTCCGCTTAGAAGGCGGGTGCTCTATCC 793 Query 32069 AGCTGAGCTA 32078 | |||||||| Sbjct 794 AACTGAGCTA 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621995887964880