Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4708 161 1e-34 seq5801 129 7e-25 seq339 113 6e-20 seq6198 100 4e-16 >seq4708 Length=1380 Score = 161 bits (178), Expect = 1e-34 Identities = 341/502 (68%), Gaps = 20/502 (4%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||| ||||| ||||| ||||| | ||||| |||||||| || ||| ||||| Sbjct 725 CTGACGGTCAAAACGACCCGGGCGCAAAAGCGCCGGATCAAGGACGTCTGGGCGGTTCGT 666 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTG 16000 ||| || | | | || ||| | | ||||||||||||||||| ||| ||||| Sbjct 665 TGCCGCAACAATGATGATGCCTTCATTGGCTTCAAAACCATCCATCTCAACCAATAGCTG 606 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTT 16058 ||| | ||||| || || |||||||| ||| | || |||||| | |||| Sbjct 605 GTTCAATGTTTGCTCGCGCTCATCATTACCGCCGCCAAG--ACCAGCGCCGCGTGAACGG 548 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT----TTCGCGAGCGAC 16114 || || || ||||| || ||||| |||| ||| || || ||| || || || Sbjct 547 CCGACCGCGTCAATTTCGTCAATAAAGATGATACAAGGCGCATTACGTTTGGCTTGC--- 491 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 || || | || || ||||| ||||||| ||||| ||||||||||| ||||| | | Sbjct 490 -TCGAACATGTCGCGGACACGGCTGGCGCCTACACCGACAAACATCTCTACAAAATCAGA 432 Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | ||| |||| || ||| ||||| | |||||| ||||| || ||||||||||| | Sbjct 431 CCCTGAA-ATTGTGAAGAATGGGACGCCTGCTTCACCAGCAATCGCACGGGCGAGAAGGG 373 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---AC 16290 | ||||| || |||||| || ||||| || ||| || || || |||| || Sbjct 372 TTTTACCTGTTCCTGGCGGTCCAATCAGGAGTGCGCCTTTGGGGATTTTACCGCCAAGAC 313 Query 16291 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGG 16350 | || | | || || | || || || || |||| |||||||||||| ||||| | Sbjct 312 GTTGGAATTTTGTC---GGATCTTTCAGGAAGTCGACAACCTCTTCCAATTCTTCTTTTG 256 Query 16351 CGGCGTCAATCCCCTCAACATC 16372 | | |||| || ||||||| Sbjct 255 CTTCATCAACGCCTGCAACATC 234 >seq5801 Length=1198 Score = 129 bits (142), Expect = 7e-25 Identities = 261/379 (69%), Gaps = 14/379 (4%) Strand=Plus/Minus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 || || ||| ||||| || || || || | | ||| |||||| | ||| ||| || Sbjct 474 GACCTGACGGTCAAAACGGCCCGGCCGTAACAACGCAGGATCAAGCACATCTTTGCGGTT 415 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAA 15994 || || ||||||| | | |||| |||||| ||||||||||||||||| ||| Sbjct 414 TGTGGCCGCGATGATGATCACACCT---TCGTTAGCTTCAAAACCATCCATCTCAACCAA 358 Query 15995 AAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGT 16052 |||||||| | |||||||| || || || || ||| | |||| ||||||| || Sbjct 357 CAGCTGGTTGAGCGTTTGTTCGCGCTCGTCGTTACCGCCGCCATA--GCCAGCACCACGG 300 Query 16053 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGC 16111 || || || ||||| || || || || || || || |||||| ||| ||| | || Sbjct 299 TGACGACCGACCGCATCGATTTCGTCGATAAACACAATACATGGTGCATTCTTCTTG-GC 241 Query 16112 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 16171 |||||| | || || ||||| |||| || ||||| || ||||| || ||||||| Sbjct 240 CTGTTCAAACATGTCACGCACACGGCTGGCACCGACACCCACGAACATTTCAACAAAGTC 181 Query 16172 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 16230 | | | | || | | ||| |||||| | || ||||| ||||| || || || | Sbjct 180 AGACCCCG-AGATGGTAAAGAATGGGACACCCGCCTCGCCCGCGATGGCGCGCGCCAGCA 122 Query 16231 GAGTCTTACCCGTACCTGG 16249 | || ||||||||||| || Sbjct 121 GGGTTTTACCCGTACCCGG 103 >seq339 Length=9696 Score = 113 bits (124), Expect = 6e-20 Identities = 199/284 (70%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT-CGC 16030 ||||| ||||||||||| || | |||||| | || ||||| || |||||||| | | Sbjct 3268 TCAAAGCCATCCATCTCCACCAGCAACTGGTTGAGTGTCTGTTCGCGCTCATCATTACCC 3209 Query 16031 TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 || | || |||| || || || || |||||||||||||| ||||||| ||| Sbjct 3208 CCGCCAAGT-CCGGCACCACGATGGCGACCGACCGCATCAATCTCATCGATGAAGATGAT 3150 Query 16091 GCATG----GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 ||| | ||| | ||||| || || || | || || || || | || || | Sbjct 3149 GCAAGGTGAGTTCTTCTTCGCCTGC----TCGAACATGTCGCGCACGCGGCTCGCACCGA 3094 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGAT 16205 | || |||||||| || ||||||| | ||||| || | || ||| || ||||| | | Sbjct 3093 CGCCTACAAACATTTCAACAAAGTCAGAACCGGAA-ATCGTGAAGAACGGCACATTCGCT 3035 Query 16206 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || |||||||| || || || || |||||||| |||||||| Sbjct 3034 TCGCCTGCAATGGCCCGCGCCAGCAGCGTCTTACCAGTACCTGG 2991 >seq6198 Length=1149 Score = 100 bits (110), Expect = 4e-16 Identities = 281/421 (67%), Gaps = 14/421 (3%) Strand=Plus/Plus Query 15837 AAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGA 15896 || |||| |||||| || |||| ||| | | |||| | || ||| ||||| || Sbjct 683 AAAATCTGCTCGCGACCTTTAACATCTGGTAAACCTACCACTACCTGACGGTCAAACCGG 742 Query 15897 CCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACA 15956 || || || | | ||| ||||| | ||| || || || || || || |||| Sbjct 743 CCCGGACGCAATAACGCCGGGTCAAGCACATCTGGCCGGTTGGTGGCAGCAATAACAATG 802 Query 15957 ATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCC 16016 |||||| | | |||||| |||||||| ||| || | |||||| | ||||| || Sbjct 803 ATACCTTCATTGCCATCAAAGCCATCCATTTCTACCAGCATCTGGTTTAAGGTTTGCTCG 862 Query 16017 CGTTCATCATTCGCTG-GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 16075 || ||||| | | || || ||| |||| || || || || |||||||| || Sbjct 863 CGCTCATCGTGGCCACCGCCTAA-ACCGGCACCACGCTGGCGACCTACCGCATCAATTTC 921 Query 16076 ATCAATGAAGACGATGCATGGT--TGATTTTC--GCGAGCGACTTCAAAGAGATCCCGTA 16131 ||| ||||||| ||| || ||| || |||| || || ||||| | || || | Sbjct 922 ATCGATGAAGATGATACAGGGTGATGCTTTTTTGGCTTGC----TCAAACATGTCACGAA 977 Query 16132 CACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGATG 16190 ||||| ||| || |||||||||||||| || ||||||| | | | || | | | | | Sbjct 978 CACGCGAGGCACCAACACCAACAAACATTTCAACAAAGTCAGAGCCAGAGATAGT-AAAG 1036 Query 16191 AAGGGGACATTAGATTCACCCGCAAT-GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || || || | ||| || ||||| | || | | | ||| || ||||| ||||| || Sbjct 1037 AAAGGTACTTTCGCTTCGCCGGCAATAGCCTTAGCCAACAAG-GTTTTACCGGTACCCGG 1095 Query 16250 C 16250 | Sbjct 1096 C 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620613774415440