Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq8042 293 3e-74 seq9616 241 2e-58 seq15666 190 2e-43 seq10300 141 1e-28 seq16440 87.8 2e-12 seq8912 87.8 2e-12 seq1724 87.8 2e-12 seq9045 84.2 3e-11 seq80 82.4 9e-11 >seq8042 Length=962 Score = 293 bits (324), Expect = 3e-74 Identities = 475/679 (70%), Gaps = 11/679 (2%) Strand=Plus/Minus Query 181763 AGGCAATTTGAACTTGCTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCC 181822 ||||| ||||| | || | || || | || || || |||||||| | || || | Sbjct 731 AGGCAGTTTGAGATAGCCAGCTTAGTCAGTATACGTCCGTACAATGCTCTAGCCTTCACA 672 Query 181823 GGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGG 181882 || ||||| ||| | | || || || |||| || ||| | || |||||| |||| Sbjct 671 GGCCCTATAATACTATACATATCAGTGTTCGTCATTTACCCTTTAGGTCAATCCTCTTGG 612 Query 181883 TTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGC 181942 |||||||| || || | || || || || || ||| | ||||| || ||||| || ||| Sbjct 611 TTCTTTGCACCTAGCTATGGAGTTGCAGCCATCTTCAGGTTCCTCCTATTCCTACAAGGC 552 Query 181943 TTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGC 182002 ||||| |||||||| || || || |||||||||||||| | || || ||| |||| | Sbjct 551 TTTCACAATTGGACTCTAAACCCATTCCATATGATGGGAATAGCAGGAATCTTGGGAGCA 492 Query 182003 GCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGAC 182062 || | | || || || || |||| || || | || ||| | |||||||| ||| Sbjct 491 GCTCTTTTATCAGCTATACATGGTGCCACAGTAGTTAACACTATATATCAAGATGGT--- 435 Query 182063 CAAGC---AAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATG 182119 ||||| | || |||| | ||||| | |||| ||| || || || || || ||| Sbjct 434 CAAGCTTACACAACCTTCAGATCATTCTCTCCAACGCAACCTGAGGAGACTTACTCTATG 375 Query 182120 GTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGG 182179 | ||||| || | ||||||||||| | |||| | || ||| ||||||||| ||| Sbjct 374 CTAACAGCTAATAGATTCTGGTCTCAAGTACTCGGAGTAGCATTTTCCAATAAGAGATGG 315 Query 182180 TTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATT 182239 | || ||||| | || || || || || || | ||||| ||| || || || Sbjct 314 CTTCACTTCTTCCTACTATTAGTACCAGTAGCAGGAATGTGGACCTCTTCTATAGGAATA 255 Query 182240 ATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCA 182299 || || || || |||||||| | || ||||||||| |||| | || | | | || || Sbjct 254 ATAGGACTAGCATTCAACCTTAGAGCATATGACTTTATATCTC-AGGAGTAAAGGCTGCA 196 Query 182300 GAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGT 182359 || ||||||||||| ||||| ||||| || |||||||| || | ||||||||| | ||| Sbjct 195 GAGGACCCAGAGTTTGAGACATTCTATACTAAGAACATACTACTTAATGAAGGTATCCGT 136 Query 182360 GCATGGTTAGCA--CCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTAT 182417 |||| | ||| ||| || ||||| ||||||||||| ||||||||||||||| Sbjct 135 TTATGGATGGCAGTCCA--AGAACAACCTCATGAGAACTTCCAATTCCCTGAGGAAGTAC 78 Query 182418 TACCCAGAGGTAACGCACT 182436 | || ||||| ||| |||| Sbjct 77 TTCCAAGAGGCAACTCACT 59 >seq9616 Length=845 Score = 241 bits (266), Expect = 2e-58 Identities = 367/520 (71%), Gaps = 2/520 (0%) Strand=Plus/Plus Query 180213 ATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 180272 ||||| || || ||| ||| |||||||||| ||| | || ||||||||||| |||| | Sbjct 32 ATGCCACTAGGTATTAGTGGAACCTTCAACTTTATGTTAGTATTCCAAGCAGAACACAGC 91 Query 180273 ATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTC 180332 || | ||||| || |||||||| | |||||||||| ||| ||||| || || || ||| Sbjct 92 ATTTTAATGCATCCATTCCACATATTAGGAGTAGCAGCTGTTTTCGGAGGATCTCTATTC 151 Query 180333 TCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAG 180392 || ||||| || ||| |||| || || || || || || || || | || | Sbjct 152 AGTGCTATGCATGGATCATTGGTAACTTCATCTCTACTTGCAGAGACACTTGGATCTAAC 211 Query 180393 TCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCA 180452 || | || | || || | || || || | || ||||| || | ||| || ||| Sbjct 212 TCACTCAATTCAGGCTATATATTCGGACAGTAGGATGAGACATATAGCATATCAGCAGCA 271 Query 180453 CATGGATACTTCGGTCGTCTGATCTTCCAGTAT-GCATCGTTCAACAACTCCCGTTCACT 180511 ||||||||||| ||| | || || |||||||| | | | || |||||||| | | Sbjct 272 CATGGATACTTTGGTAGACTAATATTCCAGTACAGTAGCTTT-AACAACTCAAGAAGCAT 330 Query 180512 TCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAG 180571 ||||||||||| ||||||||||| || | || || |||||||| | || || ||| Sbjct 331 ACACTTCTTCCTAGCAGCATGGCCAGTAATAGGTATATGGTTCACCTCTCTAGGAGTATC 390 Query 180572 CACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGG 180631 || ||||| || ||| | || ||| | ||||||||| | || | | || |||| Sbjct 391 TACAATGGCTTTTAACTTAAATGGTCTGAACTTCAACGAATCACTTGTAGACTCAGAAGG 450 Query 180632 TCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTAT 180691 || | | | ||||| ||||| ||| |||| || | || | || ||||||||||| || Sbjct 451 TCATCTAATTAACACATGGGCCGACATACTTAATAGAGCAGACCTAGGTATGGAAGTAAT 510 Query 180692 GCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCA 180731 ||| ||| | ||||| |||||||||||||| || || ||| Sbjct 511 GCATGAGAGGAATGCACACAACTTCCCACTAGATCTAGCA 550 >seq15666 Length=534 Score = 190 bits (210), Expect = 2e-43 Identities = 349/509 (69%), Gaps = 3/509 (1%) Strand=Plus/Plus Query 180213 ATGCCCCTCGGCATTTCTGGCACCTTCAACTAC-ATGCTTGTTTTCCAAGCAGAGCACAA 180271 ||||| || || ||| ||| |||||||||| ||| | || ||||||||||| ||||| Sbjct 28 ATGCCACTAGGTATTAGTGGAACCTTCAACTTTTATGTTAGTATTCCAAGCAGAACACAA 87 Query 180272 CATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTT 180331 ||| | |||||||| |||||||| | |||||||||| ||| || || || || || || Sbjct 88 CATTTTAATGCACCCATTCCACATATTAGGAGTAGCAGCTGTTTTTGGAGGATCTCTATT 147 Query 180332 CTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGA 180391 | || ||||| || ||| |||| || || || || || || || || | || | Sbjct 148 CAGTGCTATGCATGGATCATTGGTCACTTCATCTCTACTTGCAGAGACACTTGGATCTAA 207 Query 180392 GTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGC 180451 || | || | || || | | || || || || ||||| || | ||| || || Sbjct 208 CTCACTCAATTCAGGCTATATATGTGAACAGGAGGATGAGACATATAGCATATCAGCAGC 267 Query 180452 ACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACT 180511 |||||||||||| ||| | | || |||||||| | || |||||||| | || Sbjct 268 ACATGGATACTTTGGTAGACCAATATTCCAGTACGGTAGCTTTAACAACTCAAGAAGCCT 327 Query 180512 TCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAG 180571 ||||||||||| ||||||||||| || | || || |||||||| | || || | | Sbjct 328 ACACTTCTTCCTAGCAGCATGGCCAGTAATAGGTATATGGTTCACCTCTCTAGGAGCATC 387 Query 180572 CACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGG 180631 || ||||| || ||| | || | | | |||| | || | | || ||| Sbjct 388 TACGATGGCTTTTAACTTAAATG--TGAGCCCTCAATGAATCACTTGTAGACTCAGAAGA 445 Query 180632 TCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTAT 180691 || | | | ||||| ||||| ||| |||| || | || | || ||||||||||| || Sbjct 446 TCATCTAATTAACACATGGGCCGACATACTTAATAGAGCAGACCTAGGTATGGAAGTAAT 505 Query 180692 GCACGAGCGTAATGCTCACAACTTCCCAC 180720 ||| ||| | ||||| ||| ||||||||| Sbjct 506 GCATGAGAGGAATGCACACGACTTCCCAC 534 >seq10300 Length=803 Score = 141 bits (156), Expect = 1e-28 Identities = 222/318 (70%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 180414 TTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTG 180473 || || || || || ||||| || | ||| || |||||||||||||| ||| | || Sbjct 613 TTCGGACAGGAGGATGAGACATATAGCATATCAGCAGCACATGGATACTTTGGTAGACTA 554 Query 180474 ATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGG 180533 || ||||| || | || |||||||| | || ||||||||||| ||||||||| Sbjct 553 ATATTCCAATACGGTAGCTTTAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGCATGG 494 Query 180534 CCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAAC 180593 || || | || || |||||||| | || || ||| || ||| | || ||| | || Sbjct 493 CCAGTAATAGGTATATGGTTCACCTCTCTAGGAGTATCTACAATGACTTTTAACTTAAAT 434 Query 180594 GGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCA 180653 || | |||||||| | || | | || |||||| | | | ||||| ||||| Sbjct 433 GGCCTGAACTTCAATGAATCACTTGTAGACTCAGAAGGTCATCTAATTAACACATGGGCC 374 Query 180654 GACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 180713 ||| |||| || | || | || ||||||||||| ||||| ||| | ||||| ||| || Sbjct 373 GACATACTTAATAGAGCAGACCTAGGTATGGAAGTAATGCATGAGAGGAATGCACACGAC 314 Query 180714 TTCCCACTTGACCTGGCA 180731 |||||||| || || ||| Sbjct 313 TTCCCACTAGATCTAGCA 296 >seq16440 Length=503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||| ||||||||||| ||||||||||||||| | ||||||| Sbjct 309 GGGGTTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 368 Query 129370 CCCCATAACTCCA 129382 || | |||||||| Sbjct 369 CCGCTTAACTCCA 381 >seq8912 Length=891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||| ||||||||||| ||||||||||||||| | ||||||| Sbjct 819 GGGGTTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 760 Query 129370 CCCCATAACTCCA 129382 || | |||||||| Sbjct 759 CCGCTTAACTCCA 747 >seq1724 Length=1402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||| ||||||||||| ||||||||||||||| | ||||||| Sbjct 690 GGGGTTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 631 Query 129370 CCCCATAACTCCA 129382 || | |||||||| Sbjct 630 CCGCTTAACTCCA 618 >seq9045 Length=882 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 140961 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGAGTCCTACC 141020 |||||||||||||||||||| | ||||||||||| | |||||| |||||||| |||| | Sbjct 803 TAGCTCAGTTGGATAGAGCACCCGCCTTCTAAGCGGACGGTCGCAGGTTCGAATCCTGCA 744 Query 141021 TGGGTCGCC 141029 |||||||| Sbjct 743 GGGGTCGCC 735 >seq80 Length=23092 Score = 82.4 bits (90), Expect = 9e-11 Identities = 55/60 (92%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 141337 TTAGCTCAGA-GGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCGATCCCGTCA 141395 ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1954 TTAGCTCAGCTGGGAGAGCATCTCGTTTACACCGAGAGGGTCGGCGGTTCGATCCCGTCA 2013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610270318153080