Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq61 95.1 1e-14 seq2601 89.7 5e-13 seq3892 84.2 2e-11 >seq61 Length=26538 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39742 GCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACCGGAATC 39801 |||||||| ||||| || ||||| || ||||| | ||||| || || ||||| ||| Sbjct 15721 GCATGATCTTCAACGAACAGCCAATCGCGCACATTCTCGCCCGCGCCGTAAACCGGGATC 15662 Query 39802 TCTTTATTCGTCAAGATACTTGTGA-TGATTTTTGGGATCAGCTTTTCTGGATGTTGATA 39860 || | | ||| || || ||| |||||||||||||| ||| ||||| Sbjct 15661 GGCTTGC-CATGAAGCGCGTTCAGAATGACCACCGGGATCAGCTTTTCCGGAAAATGATA 15603 Query 39861 AGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGCGGTGCCA 39920 ||||| | || || || ||||| | | ||| || ||||| |||||||| ||||||| Sbjct 15602 GGGCCCGTAATTGTTCGAACAGTTCGACAGCACCACGGGCAACCCGTAGGTGTGGTGCCA 15543 Query 39921 AGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGC 39956 || |||| ||||| || ||||| || || ||||| Sbjct 15542 CGCCATCACCAGATGATCCGATGCCGCTTTCGACGC 15507 >seq2601 Length=2125 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 39262 AATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAGTAGATCATGGGTTTGTC 39321 |||||| ||| |||||||||| |||||||| || || ||||| ||||| || ||||| Sbjct 43 AATATCGCGAATACCAGCCAACATTAATACCGACAATGGATAGTAAATCATTGGCTTGTC 102 Query 39322 ATACACAGGGAGCAATTGCTTGCTCACACTGCGTGTTACCGGATGAAGGCGGGTTCCACT 39381 || ||||| | |||||||| |||| | || | |||| || | || ||| Sbjct 103 GTATACAGGCAATAATTGCTTAGATACACCTCTGGTGATTGGATATAGCCTGGAGCCAGA 162 Query 39382 TCCTCCCGCCAAAATAATACCTTTCAT 39408 ||| || || ||||||||||||||||| Sbjct 163 TCCGCCGGCTAAAATAATACCTTTCAT 189 >seq3892 Length=1582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 39227 AAGTCTTCCTGATCACCTGGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATC 39286 ||| || ||||||| ||| ||| || || || | ||| || || | | || |||| Sbjct 237 AAGGCTGCCTGATCTTCTGCTGTAGTAATTATCAGAATGTCGCGGATCCCTGACAGCATC 178 Query 39287 AATACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTC 39346 | || |||| |||||||||||||| |||||||| || | || ||||||||||| Sbjct 177 AGCACTGATATCGGGTAGTAGATCATCGGTTTGTCGTAGATCGGCAGCAATTGCTTAGAT 118 Query 39347 ACACTGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTT 39405 |||| || || | |||||| | ||| | || | ||||| |||| | |||||||| Sbjct 117 ACACCACGCGTGATCGGATGCAAACGGCTACCGGTGCCTCCTGCCAGCACTATACCTTT 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472532465073240