Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4708 145 9e-30 seq5801 111 2e-19 seq4240 104 3e-17 >seq4708 Length=1380 Score = 145 bits (160), Expect = 9e-30 Identities = 338/502 (67%), Gaps = 26/502 (5%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| || |||| | || ||||| ||| | |||||| |||| || || || || Sbjct 233 TGATGTTGCAGGCGTTGATGAAGCAAAAGAAGAATTGGAAGAGGTTGTCGACTTCCTGAA 292 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCC---AAGATCCCCCGAGGCGCCCTTCTCGC 175307 | || || | | || | || || | || |||||| |||||| || || Sbjct 293 AGATCC---GACAAAATTCCAACGTCTTGGCGGTAAAATCCCCAAAGGCGCACTCCTGAT 349 Query 175308 GGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGT 175367 || |||||| || || || ||||| |||||||| || || || |||||| || || Sbjct 350 TGGACCGCCAGGAACAGGTAAAACCCTTCTCGCCCGTGCGATTGCTGGTGAAGCAGGCGT 409 Query 175368 CCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 ||||||| || || | || | | | ||||| ||||||||||| ||||| || |||| Sbjct 410 CCCATTCTTCACAATT-TCAGGGTCTGATTTTGTAGAGATGTTTGTCGGTGTAGGCGCCA 468 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTC 175482 | || ||||| | || || || || ||| || || ||||| |||| Sbjct 469 GCCGTGTCCGCGACATGTTCGA----GCAAGCCAAACGTAATGCGCCTTGTATCATCTTT 524 Query 175483 ATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCA--AATG 175540 ||||| || ||||| ||||| ||| |||| |||||||| | | | || |||| Sbjct 525 ATTGACGAAATTGACGCGGTCGGCCGTTCACGCGGCGCTGGTCTT--GGCGGCGGTAATG 582 Query 175541 ACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATG 175597 | ||| | || |||||| | || || ||| | ||||||||||| ||||| ||||| Sbjct 583 ATGAGCGCGAGCAAACATTGAACCAGCTATTGGTTGAGATGGATGGTTTTGAAGCCAATG 642 Query 175598 AGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCC 175657 | ||||| | || ||||||| || || ||| || |||||||| || || Sbjct 643 AA---GGCATCATCATTGTTGCGGCAACGAACCGCCCAGACGTCCTTGATCCGGCGCTTT 699 Query 175658 TTCGCCCGGGTCGTTTTGATCG 175679 | ||||||||||||||||| || Sbjct 700 TGCGCCCGGGTCGTTTTGACCG 721 >seq5801 Length=1198 Score = 111 bits (122), Expect = 2e-19 Identities = 313/473 (66%), Gaps = 12/473 (3%) Strand=Plus/Plus Query 175213 GCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTG-- 175270 || ||||| || |||||||| ||||| || || || | |||||| ||| ||| | Sbjct 1 GCTAAAGAAGAGCTTGAAGAAATTGTCGAATTCCTGC-GTAACCCGC-AGAAATTCAGCC 58 Query 175271 GAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGA 175330 | || | || ||||| ||| ||| | || | || || |||||||| || | Sbjct 59 GCCTCGGCGGTAAAATCCCGAAAGGTGCCTTGCTTGAAGGACCTCCGGGTACGGGTAAAA 118 Query 175331 CCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCAT--CCAGTGCTCTGC 175388 |||| || || || ||||||||||| || | |||||||||| | ||| ||| | Sbjct 119 CCCTGCTGGCGCGCGCCATCGCGGGCGAGGCGGGTGTCCCATTCTTTACCAT--CTCGGG 176 Query 175389 CGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGA 175448 | ||||||| || ||||| || ||||| ||||||| | || || || | ||||| Sbjct 177 GTCTGACTTTGTTGAAATGTTCGTGGGTGTCGGTGCCAGCCGTGTGCGTGACATGTTTGA 236 Query 175449 AATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAA 175508 | ||| | ||| |||||||||||| || || || || || |||||||| || Sbjct 237 ACAGGCCAAGAAGAATGCACCATGTATTGTGTTTATCGACGAAATCGATGCGGTCGGTCG 296 Query 175509 GCAACGCAGCGCTGGTGGTATGCCAGC--AAATGACGAGAGAGAACAAACAATTAATCAA 175566 || || | |||| | |||| | || || |||||| | |||||||| | || || Sbjct 297 TCACCGTGGTGCTG--GCTATGGCGGCGGTAACGACGAGCGCGAACAAACGCTCAACCAG 354 Query 175567 CTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACT 175626 || | ||||||||||| ||||| | | || | | | || |||||||| Sbjct 355 CTGTTGGTTGAGATGGATGGTTTTGAAGCTAACGAAGGTGTGATCATCATCGCGGCCACA 414 Query 175627 AATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || ||| ||| | |||||| || | | || ||||| |||||||| || Sbjct 415 AACCGCAAAGATGTGCTTGATCCTGCGTTGTTACGGCCGGGCCGTTTTGACCG 467 >seq4240 Length=1484 Score = 104 bits (114), Expect = 3e-17 Identities = 210/309 (68%), Gaps = 12/309 (4%) Strand=Plus/Minus Query 175281 CAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGC 175340 |||||| || || ||||| || || | ||| || || || || |||||| | || || Sbjct 304 CAAGATTCCGCGCGGCGCGCTGCTTGTGGGCCCCCCGGGCACCGGCAAGACCTTGCTGGC 245 Query 175341 CCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGT 175400 ||| || |||||||||||| | ||||| || ||| || | || | | |||| || Sbjct 244 CCGCGCGATCGCGGGTGAAGCCAATGTGCCGTTCTTCACGATTTCCGGGTCCGACTTCGT 185 Query 175401 GGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGA 175460 || |||||||| || || || |||| | || ||||| | ||||| || || | Sbjct 184 CGAAATGTTTGTAGGCGTTGGCGCCAGCCGCGTGCGCGACATGTTTGA----GCAGGCAA 129 Query 175461 AAATCA----ACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCA 175516 ||| | ||| || ||||| ||||| || ||||| ||||| || ||| ||| ||| Sbjct 128 AAAAGAACGCACCCTGCATTGTTTTCATCGACGAGATCGATGCCGTTGGCCGGCACCGCG 69 Query 175517 GCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 |||| || ||| || | ||||| ||| | || ||||| | || || || || Sbjct 68 GCGCGGGCCTGGGCGGC--GGCAATGATGAGCGTGAGCAAACGCTGAACCAGCTGCTGGT 11 Query 175575 CGAGATGGA 175583 ||||||||| Sbjct 10 CGAGATGGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596445983321760