Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_020862.2 Length=74485 Score E Sequences producing significant alignments: (Bits) Value seq13372 190 1e-43 seq388 183 1e-41 seq341 181 5e-41 seq34 116 2e-21 >seq13372 Length=642 Score = 190 bits (210), Expect = 1e-43 Identities = 308/442 (70%), Gaps = 1/442 (0%) Strand=Plus/Minus Query 41358 TACAGCTTCCATGAAAGCGTCAGTAACCAAAACAGAAACGTTGAAGTTACGTAGACGAGC 41417 ||| |||| |||||||| || |||| ||| || || | ||||| | || | || || Sbjct 570 TACCGCTTTCATGAAAGGATCGGTAATCAACACGGACATATTGAACATCCGCAACCGCGC 511 Query 41418 AGGGTCTTGTTTAGCTGTAATGAAGTCCATTATATCAGGATGATCACAACGCATTGTAGC 41477 |||||| ||| || | ||||| ||| | ||| || ||||| || ||||| || || Sbjct 510 AGGGTCAGATTTGGCCGCGATGAAATCCTCAACATCTGGGTGATCGCACCGCATGGTCGC 451 Query 41478 CATCATAGCACCACGGCGAGAGCCTGCACTCATGATAGTTTTACACATTGAATCCCAAAC 41537 |||||| ||||| ||||| || || ||| ||| || || |||||| | ||||| || Sbjct 450 CATCATCGCACCGCGGCGCGACCCGGCAGACATAATCGTGCGACACATCGCGTCCCATAC 391 Query 41538 ATCCATAAAGGACAATGGACCACTGGCATCAGATTCTACTGATTTAACAATAGTACCTTT 41597 |||||| || ||||| || ||| ||||| | | || | || | ||||| Sbjct 390 ATCCATGAAAGACAACGGGCCAGATGCATCCGCCGCGACACCATGCACGTCCGCGCCTTT 331 Query 41598 TGGTCTGATAGTAGAGAAGTCGTAACCAATACCACCACCTTGTTGCATAGTCAGGGCAGC 41657 || | || || || || || || ||||| || || || || ||||| |||| || || Sbjct 330 GGGGCGAATGGTGGAAAAATCATACCCAATGCCGCCGCCCTGCTGCATCGTCAACGCGGC 271 Query 41658 TTCTTTGAGCATGTCAAAGATACCACTCAGACTGTCAGGGACAGTACCCATAACAAAGCA 41717 ||||||||||| ||||| || || | || ||||| || ||||| ||||| |||||||| Sbjct 270 CTCTTTGAGCATTTCAAAAATGCCCCCCATGCTGTCGGGCACAGTGCCCATGACAAAGCA 211 Query 41718 GTTAAATAGGGTTACTTTTCGTGCGGTTCCTGCACCTGATTGGATACGTCCAGCAGG-CA 41776 || |||| || || || || || || || |||| ||| || ||||| || || Sbjct 210 ATTGAATAATGTAACAGACCGCGCTGTACCCGCGCCTGCCGTGATCCGGCCAGCTGGACA 151 Query 41777 AGAATTTGAAACCTTCAAGTGC 41798 | |||||||| | ||||| || Sbjct 150 GGTATTTGAAATCCTCAAGGGC 129 >seq388 Length=8708 Score = 183 bits (202), Expect = 1e-41 Identities = 468/709 (66%), Gaps = 40/709 (6%) Strand=Plus/Plus Query 41095 GAACCCAAGAGACATGCACCATATGGAGGCAATGGTTGTTCACCACATGGGTTTGTTGCT 41154 || |||| || || |||||||| || |||| |||||||||||||| |||||||| || Sbjct 1606 GACCCCAGCAGGCAGGCACCATAGGGCGGCAGGGGTTGTTCACCACAGGGGTTTGTCGCC 1665 Query 41155 GCAATTGTCTC-ACAGAACCAAAGGTTATTCTCTTTGTTGATACGATCAATAAAGATAAC 41213 || || ||||| ||| | | | |||| || | | ||||| || || |||||||| || Sbjct 1666 GCGATGGTCTCGACATAGCTCA-GGTTGTTGGCCTGATTGATCCGGTCGATAAAGATCAC 1724 Query 41214 TCCGGGTTCAGCAAAGTCATAGGTATTTTGTAGAATAGCATTCCAAAGTTCTAGTGGGTT 41273 |||||||| ||| | |||||||| | | | ||||| || || ||| Sbjct 1725 GCCGGGTTCGGCATAATCATAGGTCGCGCGCATGACGCGGTTCCACAGATCGCGTGC--- 1781 Query 41274 TACTTCACTGTAAACTTCACCATTGAACTTTAAATCCCATCCTTCGCCATGCTCACAAAG 41333 || ||| | || | || | |||| ||| | ||||| Sbjct 1782 --------------CTGCAC-AGTG--CGGTAGA------CCTT-GCCGT-----CAAAG 1812 Query 41334 CCC----CCCATTAGCTTTAACTTTTGCTACAGCTTCCATGAAAGCGTCAGTAACCAAAA 41389 || ||||| | | | | ||| || |||||||| || | || || || | | Sbjct 1813 ACCAAATCCCATGACCCGTCCGTCTTG--ACCGCTTCCATAAAGTCATCCGTGACGAGCA 1870 Query 41390 CAGAAACGTTGAAGTTACGTAGACGAGCAGGGTCTTGTTTAGCTGTAATGAAGTCCATTA 41449 | || | |||||| | || || || || | || || || ||||| ||| | Sbjct 1871 CCGACAGGTTGAACATGCGCAGCCGTGCCGCATCCGCCTTGGCCCCGATGAAATCCTCGA 1930 Query 41450 TATCAGGATGATCACAACGCATTGTAGCCATCATAGCACCACGGCGAGAGCCTGCACTCA 41509 |||| || ||||| || ||||| || |||||||| ||||| || || || ||||| || Sbjct 1931 TATCCGGGTGATCGCAGCGCATCGTCGCCATCATCGCACCGCGCCGCGACCCTGCCGACA 1990 Query 41510 TGATAGTTTTACACATTGAATCCCAAACATCCATAAAGGACAATGGACCACTGGCATCAG 41569 |||| || ||||| | ||||| |||||||| ||||||||||| || |||||| | Sbjct 1991 TGATGGTGCGGCACATCGCGTCCCACACATCCATGAAGGACAATGGCCCCGAGGCATCCG 2050 Query 41570 ATTCTACTGATTTAACAATAGTACCTTTTGGTCTGATAGTAGAGAAGTCGTAACCAATAC 41629 | || ||| || | || || || | ||| || ||| || || || || | Sbjct 2051 CCGCCACACCTTTGACCCCTGCCCCCTTGGGCCGGATCGTGCTGAAATCATAGCCGATCC 2110 Query 41630 CACCACCTTGTTGCATAGTCAGGGCAGCTTCTTTGAGCATGTCAAAGATACCACTCAGAC 41689 | || || || ||||| ||||| ||||| ||||| ||||| || || || |||| || | Sbjct 2111 CGCCGCCCTGCTGCATTGTCAGCGCAGCCTCTTTCAGCATTTCGAAAATGCCACCCATGC 2170 Query 41690 TGTCAGGGACAGTACCCATAACAAAGCAGTTAAATAGGGTTACTTTTCGTGCGGTTCCTG 41749 |||| |||| || ||||| ||||||||||| || || ||||| || || || || | Sbjct 2171 TGTCTGGGATTGTGCCCATCACAAAGCAGTTGAACAGCGTTACCGAACGCGCCGTCCCCG 2230 Query 41750 CACCTGATTGGATACGTCCAGCAGGCAAGAATTTGAAACCTTCAAGTGC 41798 |||| | | ||| || || || |||| | |||||||| | || || || Sbjct 2231 CACCCGCTGTGATGCGGCCGGCGGGCAGGTATTTGAAATCCTCTAGCGC 2279 Score = 89.7 bits (98), Expect = 2e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 40240 AGCACAGAGCCTGTAACGTCGTTAGGACGATAGGTTGTACATCCCTTACACCCAGAGTCA 40299 |||||||| || || || ||||| ||||||||||| || || || ||||| || | || Sbjct 772 AGCACAGACCCGGTCACATCGTTCGGACGATAGGTCGTGCAGCCTTTACAGCCGGTCTCG 831 Query 40300 TAAGCGTCTTGATACACAGCTTTGAATTCCTCAAAGGTGATATCTTCAGGACAATTCACA 40359 | || || || || | ||||| |||| || |||| ||||| || || || | Sbjct 832 AACGCCTCCATGTAGACGTCCTTGAACGCCTCGAAACTGATGTCTTCGGGGCAGTTGATC 891 Query 40360 GTCTTGGAAATAGACGAGTCTACCCATTTCTGACAAACAGCCTGCAT 40406 ||||| || || || ||||| ||||||||||| |||||||||| Sbjct 892 GTCTTTGAGATCGAAGAGTCCACCCATTTCTGCGCCGCAGCCTGCAT 938 >seq341 Length=9621 Score = 181 bits (200), Expect = 5e-41 Identities = 303/437 (69%), Gaps = 1/437 (0%) Strand=Plus/Plus Query 41359 ACAGCTTCCATGAAAGCGTCAGTAACCAAAACAGAAACGTTGAAGTTACGTAGACGAGCA 41418 || || ||||| || ||||| || ||||| || |||||||| | || || || || Sbjct 6923 ACCGCCTCCATAAAGGCGTCCGTGACCAACACGCTTACGTTGAACATGCGCAGCCGCGCC 6982 Query 41419 GGGTCTTGTTTAGCTGTAATGAAGTCCATTATATCAGGATGATCACAACGCATTGTAGCC 41478 ||||| || ||| || ||||| || || || || || || || ||||| || ||| Sbjct 6983 GGGTCCGACTTGGCTTCGATAAAGTCAATAATGTCGGGGTGGTCGCACCGCATCGTGGCC 7042 Query 41479 ATCATAGCACCACGGCGAGAGCCTGCACTCATGATAGTTTTACACATTGAATCCCAAACA 41538 ||||| || || || || || || || ||| ||||| ||||| |||||||| ||| Sbjct 7043 ATCATCGCCCCCCGCCGGGACCCCGCCGACATAATAGTGCGGCACATCGAATCCCACACA 7102 Query 41539 TCCATAAAGGACAATGGACCACTGGCATCAGATTCTACTGATTTAACAATAGTACCTTTT 41598 |||||||| ||||| || ||||||||||| | | || | || | | || || Sbjct 7103 TCCATAAACGACAAAGGCCCACTGGCATCCGCCGCCACACCCGTCACGCTCGCGCCCTTG 7162 Query 41599 GGTCTGATAGTAGAGAAGTCGTAACCAATACCACCACCTTGTTGCATAGTCAGGGCAGCT 41658 || | ||| || || || ||||| || || |||||||| || ||||| ||||| || || Sbjct 7163 GGCCGGATGGTCGAAAAATCGTAGCCGATCCCACCACCCTGCTGCATCGTCAGCGCGGCC 7222 Query 41659 TCTTTGAGCATGTCAAAGATACCACTCAGACTGTCAGGGACAGTACCCATAACAAAGCAG 41718 || || |||||||| || || || | || ||||| ||||| || ||||| || || || Sbjct 7223 TCCTTCAGCATGTCGAAAATTCCGCCCATGCTGTCGGGGACCGTGCCCATGACGAAACAA 7282 Query 41719 TTAAATAGGGTTACTTTTCGTGCGGTTCCTGCACCTGATTGGATACGTCCAGCAGGCAAG 41778 || || | || || || || || ||||| || | || || || || ||||| Sbjct 7283 TTGAACAACGTCACCGACCGCGCAGTCCCTGCCCCCGCCGTAATGCGGCCCGCGGGCAAA 7342 Query 41779 AATTTGAAA-CCTTCAA 41794 | |||||| ||| ||| Sbjct 7343 TACTTGAAATCCTCCAA 7359 >seq34 Length=41571 Score = 116 bits (128), Expect = 2e-21 Identities = 279/422 (66%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 41359 ACAGCTTCCATGAAAGCGTCAGTAACCAAAACAGAAACGTTGAAGTTACGTAGACGAGCA 41418 || || ||||| |||| ||||| |||| || || | |||||| | || || | Sbjct 33992 ACCGCCTCCATAAAAGGATCAGTGACCAGTACCGACAGGTTGAACATGGTCAGCCGCCCG 33933 Query 41419 GGGTCTTGTTTAGCTGTAATGAAGTCCATTATATCAGGATGATCACAACGCATTGTAGCC 41478 | || ||||| ||| ||||||||| || || ||||| || ||| || ||| Sbjct 33932 GCTTCCTGTTTTGCTTCGATGAAGTCCTCAATGTCTGGATGGGTGCACACCATGGTGGCC 33873 Query 41479 ATCATAGCACCACGGCGAGAGCCTGCACTCATGATAGTTTTACACATTGAATCCCAAACA 41538 ||||| ||||| || | || || ||| |||||| || | ||||| | | ||| ||| Sbjct 33872 ATCATGGCACCGCGTCTTGATCCGGCAGACATGATGGTCTGGCACATGGCGTTCCAGACA 33813 Query 41539 TCCATAAAGGACAATGGACCACTGGCATCAGATTCTACTGATTTAACAATAGTACCTTTT 41598 ||||||||| || || || ||||| | | || ||| || | |||||| Sbjct 33812 TCCATAAAGCTCAGCGGGCCCGATGCATCTGCCCCAACGCCTTTTACTTCGGCACCTTTG 33753 Query 41599 GGTCTGATAGTAGAGAAGTCGTAACCAATACCACCACCTTGTTGCATAGTCAGGGCAGCT 41658 |||| | || |||||||| || || || ||||| || || ||||| || ||||| ||| Sbjct 33752 GGTCGCAGGGTGGAGAAGTCATACCCGATGCCACCGCCCTGCTGCATGGTGAGGGCGGCT 33693 Query 41659 TCTTTGAGCATGTCAAAGATACCACTCAGACTGTCAGGGACAGTACCCATAACAAAGCAG 41718 || || | || || || |||| || ||||| ||| ||||| || || || Sbjct 33692 TCCTTCAAGGCCTCGAAAATCCCACCCATGTCATCAGGTACATCGCCCATGACGAAACAA 33633 Query 41719 TTAAATAGGGTTACTTTTCGTGCGGTTCCTGCACCTGATTGGATACGTCCAGCAGGCAAG 41778 || || ||||| ||| ||| |||| || || || | ||| || || || ||||| Sbjct 33632 TTGAAGAGGGTGACTGAGCGTTCGGTGCCAGCCCCGGCAACGATGCGCCCGGCGGGCAAA 33573 Query 41779 AA 41780 || Sbjct 33572 AA 33571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238179070437662