Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq8 172 1e-38 seq6760 82.4 2e-11 seq5952 82.4 2e-11 seq1071 80.6 7e-11 >seq8 Length=70259 Score = 172 bits (190), Expect = 1e-38 Identities = 240/340 (71%), Gaps = 25/340 (7%) Strand=Plus/Plus Query 39913 GAGTTTTCCGCTAAGTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATCGAAG 39972 ||||||||||| | || |||||||||||||||||||| ||||||| || ||||| Sbjct 9298 GAGTTTTCCGCGAGAACCCCTTGGCTGGGAGAGGAGCGGAAAGGCATGAAAGCCTCGAAA 9357 Query 39973 TTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGTCGCA 40032 ||||| || ||||||||||||||||| | || |||||||| ||||||| | ||| ||| Sbjct 9358 TTCACGGACGCGCAGAAGGCGTTCATTATCAAACAGGGCGAAGAAGGCATTCAGGTTGCA 9417 Query 40033 AAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGGAAGAAGCGATAT 40092 |||| || |||||||| || || || ||||| |||| || |||||||||||| ||| Sbjct 9418 GAGATTTGTCGCAAGGCTGGAATTTGCCAGGCGACCTATTTTAACTGGAAGAAGAAGTAT 9477 Query 40093 G-------GCGGC---------TAAAGC---------AGCTTGAGGACGAGAATGCCCGA 40127 | || || | |||| |||| || |||||||| || | Sbjct 9478 GCAGGGTTGCTGCCAACGGATATGAAGCGTTTGCGTGAGCTGGAAGACGAGAACTCCAGG 9537 Query 40128 CTGAAGAAGATCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACGTCATCCGC 40187 || || |||||||| || || || | |||||| |||||| | ||||||| || Sbjct 9538 CTAAAAAAGATCGTTGCTGATCTATCCCTCGACAAAGAGATGCTTCAGGACGTTCTCAAG 9597 Query 40188 CGAAAACTCTGAGGCCTTTCCGGAAGCGACAGCTCGTCGA 40227 ||||| ||| || |||| |||| |||| || ||||| Sbjct 9598 CGAAAGCTCCGAAGCCTCCTCGGAGGCGAACCCTGGTCGA 9637 >seq6760 Length=1084 Score = 82.4 bits (90), Expect = 2e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 133 GATTGAAAATCCGCGTGTCGGTGGTTCGAATCCGCCTCCGGGCACCACTTAAG 185 ||||||||||||||||||||||||||||| |||||||| |||||||||| ||| Sbjct 833 GATTGAAAATCCGCGTGTCGGTGGTTCGATTCCGCCTCTGGGCACCACTAAAG 781 >seq5952 Length=1178 Score = 82.4 bits (90), Expect = 2e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 133 GATTGAAAATCCGCGTGTCGGTGGTTCGAATCCGCCTCCGGGCACCACTT 182 |||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 324 GATTGAAAATCCGCGTGTCGGTGGTTCGAATCCGCCCCCGGGCACCATTT 275 >seq1071 Length=4191 Score = 80.6 bits (88), Expect = 7e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 130 GTTGATTGAAAATCCGCGTGTCGGTGGTTCGAATCCGCCTCCGGGCACCACTTAAGC 186 || |||||||||||| |||||||||||||||| |||||| ||||||||||||| ||| Sbjct 745 GTGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCCCCGGGCACCACTTTAGC 689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128592281384282