Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq3519 178 4e-40 seq11188 122 3e-23 seq45 114 4e-21 seq2710 111 5e-20 seq912 89.7 2e-13 >seq3519 Length=1701 Score = 178 bits (196), Expect = 4e-40 Identities = 191/253 (75%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 ||| |||| ||| | |||||||||||||| || || |||||||||||||||||||| | Sbjct 450 GAAATCGACGTCAAAGTCGGGCATGGACACCCGTTCCGGGTTCAGGAACCGCTCGAACAG 509 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || ||| |||||| ||||| |||||||| ||| || ||||||| ||||| ||||| Sbjct 510 CAGGTCGTACTCCAGTGGGTCCAGGTCGGTAATCAGCAGCGCGTAGGCCACCAGGGAACC 569 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 ||| | || || || || || || ||| || ||||| | ||| ||||| ||| || Sbjct 570 GGCACCGGAACCCCGGCCGGGCCCTACCGGTACACCGTTGTTCTTGGCCCACTTGATAAA 629 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40741 |||| |||| |||||||| |||||||||||||| ||||| ||||| | |||| | Sbjct 630 GTCCATAACGATCAGGAAGTAGCCTGGGAAGCCCATCTGAATGATGATGTCCAGCTCGAA 689 Query 40742 CTGGAGCTGCTTG 40754 || || ||||| Sbjct 690 CTTCAGGCGCTTG 702 >seq11188 Length=750 Score = 122 bits (134), Expect = 3e-23 Identities = 223/323 (69%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACT--TCCGGGTGACGTACTGGATCACCTCGCCA 40487 ||||||||||||| ||| | ||||| ||| | || || ||||||||||||| Sbjct 229 GATCTGCGCGACCCGGTCATCGCCGTAGCGATCCC--TCACATAGCGGATCACCTCGCCG 286 Query 40488 CGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40545 || || || | || |||||||| ||||| || ||||| ||||| || |||||||| | Sbjct 287 CGCCGATCCTGACA--GAAGTCGACGTCGAAGTCTGGCATCGACACACGTTCGGGGTTGA 344 Query 40546 GGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGT 40605 |||| ||||| || | | ||| | ||||| || || ||||| ||| ||| | Sbjct 345 GGAAACGCTCAAACAGCAACCCGAACCGAAGCGGATCAAGATCGGTAATCGTGAGCGCCC 404 Query 40606 AGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCT 40665 ||||||||||||| || || | || || ||||| || || ||| | | | || Sbjct 405 AGGCGACCAGCGAGCCAGCGCCTGAACCCCGCCCTGGTCCCACCGGAATATCCTGAGACT 464 Query 40666 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGA 40725 | ||||| |||| ||||||| |||| ||||| || || || ||||||| || Sbjct 465 TTGCCCACTGGATAAAGTCCGAAACGATCAGGAAATAACCAGGAAACCCCATCTTTTCGA 524 Query 40726 TCATGTCGATCTCGTACTGGAGC 40748 | ||| | | |||||| | |||| Sbjct 525 TGATGCCCAGCTCGTAATCGAGC 547 >seq45 Length=31681 Score = 114 bits (126), Expect = 4e-21 Identities = 183/258 (71%), Gaps = 10/258 (4%) Strand=Plus/Plus Query 40474 GGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACAC 40531 |||||||||| | || || || | || |||||||||||| | || ||||| ||||| Sbjct 23816 GGATCACCTCATCGCGGCGGTCCTGACA--GAAGTCGATGTCAAAGTCAGGCATCGACAC 23873 Query 40532 GCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGT--GCTC-CAGCGGGTCGAGGTC 40588 ||||| ||||||| |||||||| || | ||| || || ||||||||| || || Sbjct 23874 ACGCTCAGGGTTCAAAAACCGCTCAAACAGGAG---GTTAAATCGCAGCGGGTCCAGATC 23930 Query 40589 GGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGAC 40648 ||||| || || ||||||||| ||| ||||| | || || || || || || || Sbjct 23931 TGTGATGGTCAGCACCCAGGCGACCACCGACCCGGCGCCTGACCCACGGCCCGGACCCAC 23990 Query 40649 CCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGG 40708 | || ||| ||||| ||||| ||||||||| || |||| |||||||| || Sbjct 23991 CGGGATATCGTGATCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTAGCCTGG 24050 Query 40709 GAAGCCCATCTGGATGAT 40726 || |||| | |||||| Sbjct 24051 AAAATCCATATTGATGAT 24068 >seq2710 Length=2059 Score = 111 bits (122), Expect = 5e-20 Identities = 185/265 (70%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 40467 ACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40524 ||||| ||||||||||| | || || || || ||||||||||||| ||||||| Sbjct 2047 ACGTATTGGATCACCTCCTCGCGGCGATCCATGCAA--AAGTCGATGTCGAAGTCGGGCA 1990 Query 40525 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGA 40584 | || || ||||| ||||||||||||||||| || | || | |||||| || | Sbjct 1989 TCGATACCCGCTCAGGGTTCAGGAACCGCTCAAACAGCAGCGAATATCGCAGCGGATCAA 1930 Query 40585 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40644 |||| || ||| || | || || || ||||| || || | || || || ||||| | Sbjct 1929 GGTCAGTAATCGTTAGCGCATAAGCCACAAGCGACCCCGCGCCCGACCCCCGGCCAGGCC 1870 Query 40645 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40704 | || || ||| | || || |||| |||| ||||| || |||| ||||| || Sbjct 1869 CCACGGCGATGCCCTGATCTTTGCCCCACTGGATAAAGTCGGCAACGATCAGGAAATAGC 1810 Query 40705 ACGGGAAGCCCAT---CTGGATGAT 40726 ||| |||||||| || |||||| Sbjct 1809 CCGGAAAGCCCATGCCCTCGATGAT 1785 >seq912 Length=4712 Score = 89.7 bits (98), Expect = 2e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 |||| || |||||||| || || ||||||||||| || ||| |||| || ||||||| Sbjct 1074 TCTTTTTACCCATCGCACGACGCAGCAGGTCGGCACCGCCAAGGCTGTAGCCCGCCATGA 1015 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGA 39657 ||||||||| || | |||||| ||||| |||| ||||| Sbjct 1014 CCTGCGCAATCTGCATCACCTGTTCCTGATAGACGATGA 976 Score = 82.4 bits (90), Expect = 3e-11 Identities = 122/169 (72%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACTT--CCGGGTGACGTACTGGATCACCTCGCCA 40487 |||||| | |||||||||| || || || || | ||||| |||||||||| || Sbjct 194 GATCTGGCCCACCTTGTCGGTGCCATATTTGTCCTGA--ACGTAGCGGATCACCTCTTCA 137 Query 40488 CGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40545 || || | ||| |||||||||||||| || ||||| || || || |||||||| | Sbjct 136 CGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCCGGCATAGAAACACGTTCGGGGTTGA 79 Query 40546 GGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGAT 40594 ||||||| ||||| | || | || ||||||||||||||||| Sbjct 78 GGAACCGTTCGAACAGAAGCTGATAGCGCAATGGGTCGAGGTCGGTGAT 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163852538969836