Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4708 93.3 1e-13 seq339 87.8 5e-12 >seq4708 Length=1380 Score = 93.3 bits (102), Expect = 1e-13 Identities = 227/332 (68%), Gaps = 18/332 (5%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || || || |||||||||||||| || || | ||| || | ||| || | || |||| Sbjct 547 CCGACCGCGTCAATTTCGTCAATAAAGATGATACAAGGCGCATTACGTTTGGC--TTGCT 490 Query 289090 --AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 || | || | |||||| || || | ||| ||| |||| |||||||| ||||| Sbjct 489 CGAACATGTCGCGGACACGGCTGGCGCCTACACCGACAAACATCTCTACAAAATCAGACC 430 Query 289148 CGGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | | |||| ||||| || |||||| || || | || | || ||||| || Sbjct 429 CTGAAATTGTGAA-GAATGGGACGCCTGCTTCACCAGCAATCGCACGGGCGAGAAGGGTT 371 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAAT-AGAACT--CCCTTTGGTACTTTTGCC-CCAGC 289262 ||||||||||| || ||||| ||| || | | ||||||| |||| || ||| Sbjct 370 TTACCTGTTCCTGGCGGTCC----AATCAGGAGTGCGCCTTTGGGGATTTTACCGCCA-- 317 Query 289263 AGAC-TTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 |||| || | || | || ||||| | || || |||| || || | ||| | |||| Sbjct 316 AGACGTTGGAATTTTGTCGGATCTTTCAGGAAGTCGACAACCTCTTCCAATTCTTCTTTT 257 Query 289321 GCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||||| ||||| |||||| |||| || Sbjct 256 GCTTCATCAACGCCTGCAACATCATCAAACGT 225 >seq339 Length=9696 Score = 87.8 bits (96), Expect = 5e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| || |||||||| || || ||||| || | || || || || | |||| | Sbjct 3182 ACCGACCGCATCAATCTCATCGATGAAGATGATGCAAGGTGAGTTCTTCTTCGCCTGCTC 3123 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | || | || ||| || || | || ||| ||||||| ||||| |||||| | Sbjct 3122 GAACATGTCGCGCACGCGGCTCGCACCGACGCCTACAAACATTTCAACAAAGTCAGAACC 3063 Query 289149 GGATA-CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||| | | |||| ||| | ||||| ||||||||||| | |||| |||||| || |||| Sbjct 3062 GGAAATCGTGAA-GAACGGCACATTCGCTTCGCCTGCAATGGCCCGCGCCAGCAGCGTCT 3004 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 |||| || || || || ||| | | || || ||||| || Sbjct 3003 TACCAGTACCTGGAGGGCCCACCAGCAGCACACCCTTAGG 2964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471504996520449