Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq3519 172 2e-38 seq11188 131 5e-26 seq45 107 6e-19 seq2710 102 3e-17 seq912 80.6 9e-11 >seq3519 Length=1701 Score = 172 bits (190), Expect = 2e-38 Identities = 190/253 (75%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 ||| |||| ||| | |||||||||||||| || || ||||||||||| |||||||| | Sbjct 450 GAAATCGACGTCAAAGTCGGGCATGGACACCCGTTCCGGGTTCAGGAACCGCTCGAACAG 509 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || ||| |||||| ||||| |||||||| ||| || ||||||| ||||| ||||| Sbjct 510 CAGGTCGTACTCCAGTGGGTCCAGGTCGGTAATCAGCAGCGCGTAGGCCACCAGGGAACC 569 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | || ||||| || || || ||| || ||||| | ||| ||||| ||| || Sbjct 570 GGCACCGGAACCCCGGCCGGGCCCTACCGGTACACCGTTGTTCTTGGCCCACTTGATAAA 629 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTA 40489 |||| |||| |||||||| ||||| |||||||| ||||| ||||| | |||| | Sbjct 630 GTCCATAACGATCAGGAAGTAGCCTGGGAAGCCCATCTGAATGATGATGTCCAGCTCGAA 689 Query 40490 CTGGAGCTGCTTG 40502 || || ||||| Sbjct 690 CTTCAGGCGCTTG 702 >seq11188 Length=750 Score = 131 bits (144), Expect = 5e-26 Identities = 225/323 (70%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACT--TCCGGGTGACGTACTGGATGACCTCGCCA 40235 ||||||||||||| ||| | ||||| ||| | || || |||| |||||||| Sbjct 229 GATCTGCGCGACCCGGTCATCGCCGTAGCGATCCC--TCACATAGCGGATCACCTCGCCG 286 Query 40236 CGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40293 || || || | || |||||||| ||||| || ||||| ||||| || |||||||| | Sbjct 287 CGCCGATCCTGACA--GAAGTCGACGTCGAAGTCTGGCATCGACACACGTTCGGGGTTGA 344 Query 40294 GGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGT 40353 |||| ||||| || | | |||| | ||||| || || ||||| ||| ||| | Sbjct 345 GGAAACGCTCAAACAGCAACCCGAACCGAAGCGGATCAAGATCGGTAATCGTGAGCGCCC 404 Query 40354 AGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCT 40413 ||||||||||||| || || | || |||||||| || || ||| | | | || Sbjct 405 AGGCGACCAGCGAGCCAGCGCCTGAACCCCGCCCTGGTCCCACCGGAATATCCTGAGACT 464 Query 40414 TCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGA 40473 | ||||| |||| ||||||| |||| ||||| || || |||||||||| || Sbjct 465 TTGCCCACTGGATAAAGTCCGAAACGATCAGGAAATAACCAGGAAACCCCATCTTTTCGA 524 Query 40474 TCATGTCGATCTCGTACTGGAGC 40496 | ||| | | |||||| | |||| Sbjct 525 TGATGCCCAGCTCGTAATCGAGC 547 >seq45 Length=31681 Score = 107 bits (118), Expect = 6e-19 Identities = 258/383 (67%), Gaps = 17/383 (4%) Strand=Plus/Plus Query 40102 CGACCTG---GAAGGGCTTGTCGAGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGCCT 40158 ||||||| ||| ||| | | |||||| || || | ||| ||| || | ||||| Sbjct 23693 CGACCTGCCCGAATGGCATTTGGAGCACACGCCCCACATCCCTCAGAACGGCCCTCGCCT 23752 Query 40159 TGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACT--TCCGGGTGAC 40216 | | |||| | || |||||| || |||| |||| || || ||| | || Sbjct 23753 GCAGCTTTCCGAAAGTGATGATCTGAGCCACCTGGTCGTGGCCATAGCGATCCTGC--AC 23810 Query 40217 GTACTGGATGACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATG 40274 || |||| ||||| | || || || | || |||||||||||| | || ||||| Sbjct 23811 ATAGCGGATCACCTCATCGCGGCGGTCCTGACA--GAAGTCGATGTCAAAGTCAGGCATC 23868 Query 40275 GACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGT--GCTC-CAGCGGGTCG 40331 ||||| ||||| ||||||| || ||||| || | ||| || || ||||||||| Sbjct 23869 GACACACGCTCAGGGTTCAAAAACCGCTCAAACAGGAG---GTTAAATCGCAGCGGGTCC 23925 Query 40332 AGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGG 40391 || || ||||| || || ||||||||| ||| ||||| | || || || || || Sbjct 23926 AGATCTGTGATGGTCAGCACCCAGGCGACCACCGACCCGGCGCCTGACCCACGGCCCGGA 23985 Query 40392 CCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTAC 40451 || ||| || ||| ||||| ||||| ||||||||| || |||| |||||||| Sbjct 23986 CCCACCGGGATATCGTGATCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTAG 24045 Query 40452 GACGGGAACCCCATCTGGATGAT 40474 || || |||| | |||||| Sbjct 24046 CCTGGAAAATCCATATTGATGAT 24068 >seq2710 Length=2059 Score = 102 bits (112), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 40251 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATG 40310 ||||||||||||| |||||||| || || ||||| ||||||||||| ||||| || | Sbjct 2011 AAGTCGATGTCGAAGTCGGGCATCGATACCCGCTCAGGGTTCAGGAACCGCTCAAACAGC 1952 Query 40311 AGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCG 40370 ||| | |||||| || ||||| || ||| || | || || || ||||| || Sbjct 1951 AGCGAATATCGCAGCGGATCAAGGTCAGTAATCGTTAGCGCATAAGCCACAAGCGACCCC 1892 Query 40371 GCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAG 40430 || | || ||||| ||||| || || || || | || || |||| |||| ||| Sbjct 1891 GCGCCCGACCCCCGGCCAGGCCCCACGGCGATGCCCTGATCTTTGCCCCACTGGATAAAG 1832 Query 40431 TCCGCGACGACGAGGAAGTACGACGGGAACCCCAT---CTGGATGAT 40474 || || |||| ||||| || ||| || ||||| || |||||| Sbjct 1831 TCGGCAACGATCAGGAAATAGCCCGGAAAGCCCATGCCCTCGATGAT 1785 >seq912 Length=4712 Score = 80.6 bits (88), Expect = 9e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 |||| || |||||||| || || ||||||||||| || ||| |||| || ||||||| Sbjct 1074 TCTTTTTACCCATCGCACGACGCAGCAGGTCGGCACCGCCAAGGCTGTAGCCCGCCATGA 1015 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 |||| |||| || | |||||| ||||| |||| ||| Sbjct 1014 CCTGCGCAATCTGCATCACCTGTTCCTGATAGACGAT 978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163292649206886