Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq2422 165 3e-36 seq3257 149 2e-31 seq656 149 2e-31 seq83 145 3e-30 seq5283 93.3 1e-14 >seq2422 Length=2238 Score = 165 bits (182), Expect = 3e-36 Identities = 249/349 (71%), Gaps = 4/349 (1%) Strand=Plus/Plus Query 31457 CTGTCGAGCATGGTCAGCGTCGCATTGA-AGCCGTTCAACACCACTTCGGTTGTGTAGCG 31515 ||||||||||| |||| |||| || ||| | |||||| |||||||| || || Sbjct 334 CTGTCGAGCATCTGCAGC-TCGCCGCGATAGCGCTGCAACACGACTTCGGTGGTATATTT 392 Query 31516 ATCACCACC-GTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCT 31574 || || | | | || |||||| ||||| || |||| || |||||||||||||||| Sbjct 393 GTCCTGGCCAGACTG-GTCCTGCCATTTGCGCGTCTGCAACTGACCCTCGATGTAAACCT 451 Query 31575 TCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGA 31634 |||| ||||| ||||| ||||||||| || || ||||| ||| | |||| ||||| Sbjct 452 TCGAGCCCTTCTTCAGATATTGCTCGGCCACATTCGCGAGATTTTCATTAAAGATGACGA 511 Query 31635 CGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGG 31694 ||| ||||||||||||||||| ||| || ||| | ||||| |||| ||||| Sbjct 512 CGCGGTGCCACTCGGTGCGCTCGCGGCGTTCACCGGAATTCCGGTCCTTCCAGGATTCGG 571 Query 31695 AAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGGATTTCCGGAT 31754 | ||||| | || || | ||||| | ||| | | || | |||||||| |||| Sbjct 572 ATGTCGCGATGCTGAGATTCGCGATTTTCATGCCGTCATTGGTGTGCCGGATTTCGGGAT 631 Query 31755 CGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 | || |||| || | |||||||| ||||||||||| || ||||| Sbjct 632 CACGCCCCAGATTCCCAACCAGAATGACCTTGTTGACGCTGCCCGCCAT 680 >seq3257 Length=1796 Score = 149 bits (164), Expect = 2e-31 Identities = 253/361 (70%), Gaps = 8/361 (2%) Strand=Plus/Minus Query 31449 CGCCCTGACTGTCGAGCATGGTCAGCGTCGCATTGA-AGCCGTTCAACACCACTTCGGTT 31507 |||| ||| ||| |||||||||||| || | || ||| | || |||||||| || Sbjct 1006 CGCCGCGACCGTCCAGCATGGTCAGC-TCACCGCGATAGCGCTGCAGAACCACTTCAGTC 948 Query 31508 GTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATG 31567 |||||||||||| |||||| | |||||| |||||||| || |||| ||| |||||| Sbjct 947 GTGTAGCGATCATTGCCGTCGCGATCCTGCCATTTGCGGGTCTGAAGCTGGCCTTCGATG 888 Query 31568 TAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAG 31627 |||||||| || ||||| |||||||| | ||| || || | ||| ||| ||||| Sbjct 887 TAAACCTTGGAGCCCTTCTTCAGGTAGTTCTCCGCGACTTTCGCCAGATTGTCGTTGAAG 828 Query 31628 ACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAG 31687 | ||||| | ||||||||||| || ||| ||||| || |||||||||| Sbjct 827 ATCACGACATTGTGCCACTCGGTCTTTTCGCGGCGCTCGCCCGTGGACTTGTCGCGCCAG 768 Query 31688 CTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGG--- 31744 |||||| || || | ||| || || | | | | || ||| || | ||| Sbjct 767 CTTTCGCCGGTGGCGATGCGCAGATTGACCACGGGGTCGCC-GCT--ATTCATGCGGCGC 711 Query 31745 ATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCATC 31804 | |||||| || || || |||| ||| | || || || ||||| || ||||| |||||| Sbjct 710 ACTTCCGGGTCCGCACCCAGATTGCCCACCAGGATAACCTTGTTCACACTACCCGCCATC 651 Query 31805 A 31805 | Sbjct 650 A 650 >seq656 Length=6167 Score = 149 bits (164), Expect = 2e-31 Identities = 225/316 (71%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 31492 CAACACCACTTCGGTTGTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTG 31551 || ||| ||||| || ||||||||||| |||| || ||||||||||||||||| Sbjct 998 CAGCACGACTTCTGTCGTGTAGCGATCCTGACCGGACTGGTCCTGCCACTTGCGGGTTTC 939 Query 31552 CAGCTTGCCCTCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTC-GCAAACCTTGA 31610 || | ||| |||||||||||||| || ||||| || || ||||| || |||| || | Sbjct 938 CAATTGGCCTTCGATGTAAACCTTGGAGCCCTTCTTGAGATATTGTTCTGCAATCCGCG- 880 Query 31611 CGAGACCTTCGGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGC 31670 | || ||||| || | | || || ||||| || || || |||||||| ||||| Sbjct 879 CCAGCGGTTCGGAAAAAATTGCAACACTGTGCCATTCAGTCCGTTCCTTGCGTTCGCCCG 820 Query 31671 TGTCGCGGTCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGG 31730 ||| |||||| |||| | ||||| || |||| || ||| || || | || ||| Sbjct 819 TGTTGCGGTCTTTCCAGTTCTCGGACGTGGCAATCCGCAGGTTGCAGACTTTGCCGCCGT 760 Query 31731 CTTG---TGTCTTTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGT 31787 || |||| || | |||||||||| |||||||| ||||| | ||||| |||| Sbjct 759 TCTGAAATGTC---CGCACTTCCGGATCGCGGCCGAGATTGCCGACGATGATGACCTTGT 703 Query 31788 TGACGCTACCGGCCAT 31803 |||| |||||||| Sbjct 702 TGACTGATCCGGCCAT 687 >seq83 Length=22750 Score = 145 bits (160), Expect = 3e-30 Identities = 246/356 (69%), Gaps = 18/356 (5%) Strand=Plus/Minus Query 31457 CTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTGTAGCGA 31516 || ||||||||||| || || | ||||||||| | | || | ||| || | ||||||| Sbjct 1194 CTATCGAGCATGGTGAGGGTGGAATTGAAGCCCTGTAGGACGATTTCTGTAGAGTAGCGA 1135 Query 31517 TCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTTC 31576 || ||| | || ||||| |||||||| || | || |||||| || ||||||||| Sbjct 1134 TCCTGACCCTGCTGGTCTTGCCATTTGCGGGTCTGGATCTGGCCCTCAATATAAACCTTC 1075 Query 31577 GATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGACG 31636 | |||||||| || ||||||||| | | ||||||||| |||||| || || Sbjct 1074 GCGCCCTTTTTGAGATATTGCTCGGCGATGCGGCAGAGACCTTCATTGAAGATCACCACA 1015 Query 31637 CTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGGAA 31696 | |||||||||||| ||||| ||| || ||| | || |||||||| ||| Sbjct 1014 CGATGCCACTCGGTCCGCTCACGGCGTTCCCCGGAGCTTTTATCCCGCCAGCTCTCGCTG 955 Query 31697 GTCGCAAGGCGAAGGCTGGCGATGCTAC-CCCCGGCTTG------TG--TCTTTCGGATT 31747 || |||| || || | ||| | |||| ||| || | | ||||| Sbjct 954 GTGGCAATCCGCAG---------GTTACACACCGGGTTGCCGTTCTGCATGCTGCGGATC 904 Query 31748 TCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 || ||||| || || |||| || | |||||||||||||||||| || |||||||| Sbjct 903 TCTGGATCCGCACCCAGATTTCCCACAAGAATGACTTTGTTGACACTTCCGGCCAT 848 >seq5283 Length=1279 Score = 93.3 bits (102), Expect = 1e-14 Identities = 225/341 (66%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 31451 CCCTGACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTG 31510 ||| ||| ||| ||||| |||||||||| |||||| | | ||| || || ||||| Sbjct 435 CCCCGACCGTCTAGCATAACAAGCGTCGCATCGAAGCCCTGAAGCACAACCTCAGTTGTA 376 Query 31511 TAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAA 31570 || || ||||| || ||||||||| ||||| || ||||| || || | || Sbjct 375 TACTTGTCCTGACCGTTCTGGTCCTGCCACTTACGGGTCTGAAGCTTACCTTCAAGATAG 316 Query 31571 ACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACG 31630 || || || |||||||||||||| | || ||| ||||||||| || | ||||| Sbjct 315 ACTTTAGAGCCCTTTTTCAGGTAGTTCTGAGCAACACGGACGAGACCCTCAGAGAAGATC 256 Query 31631 ACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTT 31690 | || | ||||| || || ||| ||| ||||| | | ||| ||| || Sbjct 255 GCAACACGGTGCCATTCCGTTTTCTCACGGCGTTCGCCCGTATTTTTGTCTTTCCACGTT 196 Query 31691 TCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGGATTTCC 31750 || || ||||||| | || || | | ||| || | | | ||| | |||| Sbjct 195 TCAGATGTCGCAACGGAGAGATTGCAAACGGAACCGCCCTTTGGAAATTGTCGAACTTCC 136 Query 31751 GGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGAC 31791 || || || |||| ||||| ||||||||||| ||||| Sbjct 135 GGGTCATTCCCAAGATTGCCGACTAGAATGACTTTATTGAC 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169771373606736