Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq4414 183 5e-41 seq584 116 6e-21 seq486 107 3e-18 seq1163 89.7 8e-13 seq4328 84.2 4e-11 seq1936 84.2 4e-11 >seq4414 Length=1435 Score = 183 bits (202), Expect = 5e-41 Identities = 275/385 (71%), Gaps = 22/385 (6%) Strand=Plus/Minus Query 35580 GTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACG 35639 ||||||||| ||| ||||| || || || ||||||||||| ||||||||||| || ||| Sbjct 1435 GTAGTGTTGGAGAATTCCAGGGTTACCTGGCCTTCCCACTCCGGTTCCAGCGGGGTAACG 1376 Query 35640 TTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTG 35699 || |||||||| || ||||| ||||||||||| || || | || | ||| ||| | Sbjct 1375 TTCACGATGATGCCGCAGCGGGCGTAGGTGCTTTTGCCGAGGCAGATGGTGAGTACGCTT 1316 Query 35700 CGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGG 35759 | || |||||||||||||| || ||||| ||||| ||||||||||||||||| || | Sbjct 1315 CTGGGGATGCGGAAGTATTCCACGGTGCGCGCCAGGGCGAAGCTGTTCGGCGGGAT---G 1259 Query 35760 ATGCTGTCAGCCTTAACCGGCTGCAG--------GCACTTGGGATCGAAGTTCTTCGGAT 35811 ||| ||| | | |||| || || || || |||||||||||| || | Sbjct 1258 ATG----CAGACGTCGCCGG-TGTAGTTGACGAAGCTGTTTTCATCGAAGTTCTTTGGGT 1204 Query 35812 CAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACGTCA 35870 | || ||||||| || ||||||||||| || | || | || ||| || ||||| Sbjct 1203 CTACGGTAGCGCTGTGGACGTTGGTGAAGATTTTGAATTCGT-TGCTGCAGCGTACGTCG 1145 Query 35871 TAACCATACGACGAGTTGCCGTACGAGATAACGTGCTGACC--GTCGATGTTGCGCACTT 35928 || || || ||| ||||||| ||||| || || | || ||| | | || |||| Sbjct 1144 TAGCCGTAGCTTGAGGTGCCGTAGGAGATGAC--GCGGCCCTTTTCGCTTTCCCGAACTT 1087 Query 35929 GCGACTCTTGAAAGGGTTCGATCAT 35953 | ||| |||||||||||||| Sbjct 1086 GGCCGGCTTCGAAGGGTTCGATCAT 1062 >seq584 Length=6644 Score = 116 bits (128), Expect = 6e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 35516 GTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAG 35575 ||| | || ||| |||| | ||| || | || |||||||||||||| ||||||||| Sbjct 1879 GTCGCCCTTGAAGAACACGAACTGGGCGATGCCCTCGTTCGCGTACACCTTCGCCGGCAG 1938 Query 35576 GTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGT 35635 || |||||||||| ||| | ||||| | || |||||| || || |||||||| Sbjct 1939 CGGTGTGGTGTTGCTGATCTCGATCGTCACCTTGCCGCGCCACTCCGGCTCGAGCGGCGT 1998 Query 35636 CACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGAC 35695 ||||| ||||| | || || || |||||||||||||| |||| || | ||| || || Sbjct 1999 GACGTTCACGATCAGCCCGCACCGGGCGTAGGTGCTCTTGCCCACGCAGATCACCAGCAC 2058 Query 35696 GTTGCGCGG 35704 | |||||| Sbjct 2059 ATCGCGCGG 2067 >seq486 Length=7659 Score = 107 bits (118), Expect = 3e-18 Identities = 206/301 (68%), Gaps = 17/301 (6%) Strand=Plus/Plus Query 186139 CACTTGGTTGACGTGGTTGGAGTAGATATGCGCGTCGCCGAACGTGTGGAACAGCTTGCC 186198 ||| || | ||||||||||| |||||| ||||| |||||||| ||||| | | | || Sbjct 2665 CACCTGCTCGACGTGGTTGGTGTAGATGTGCGCATCGCCGAAGGTGTGCACGAAGTCCCC 2724 Query 186199 TGATGCCAGGCCGAATGCCTGTGCCAGCATGTGCGTCATGATAGAGTAGAAGCCGAAGTT 186258 | ||| || |||| || | ||||||||||| ||| | ||| | ||| ||| Sbjct 2725 CACTCCCAATCCCGTCACCTGCGCGATCATGTGCGTCAGGATGGCGTAACTGGCGATGTT 2784 Query 186259 AAAAGGCACGCCGAGGAAGAAATCCCCGCTACGCTGATAGAGCTTGCAGTCCAGCGTCGG 186318 || |||||||||||||| | ||| | ||||| ||||||| |||| |||| Sbjct 2785 GAACGGCACGCCGAGGAACAGGTCCGCCGAGCGCTGGTAGAGCTGGCAGCTCAGC----- 2839 Query 186319 TTGCCCGTGAGCACCTTCGCGCACGCACCATTGCGAAAGCGTATGGCACGGCGGCAGCGC 186378 ||||| || || ||| | | || | ||| |||||||||||||| || Sbjct 2840 TTGCC-----GC-----CGGCGACGTAGAACTGGAACAGCAGGTGGCACGGCGGCAGGGC 2889 Query 186379 CATCTCATCCAG-ACGGCTCACGTTCCACGCACTCAGAATAATGCGGCGACTGTCGCGGT 186437 ||||| || || |||| |||||||||||| || | ||| | ||||| |||| ||| Sbjct 2890 CATCTGGTCGAGTTCGGC-CACGTTCCACGCGCTGACAATCAGCCGGCGCGAGTCGGGGT 2948 Query 186438 T 186438 | Sbjct 2949 T 2949 >seq1163 Length=3916 Score = 89.7 bits (98), Expect = 8e-13 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 120227 TGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA- 120285 |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 3401 TGCCCCTATAGCTCAGCTGGTAGAGCAACTGATTTGTAATCAGTAGGTCCGCGGTTCGAG 3342 Query 120286 TCCCTGATGCCGGCACCATATTC 120308 ||| || || |||||||| ||| Sbjct 3341 TCCGTG-TGGGGGCACCATTTTC 3320 >seq4328 Length=1462 Score = 84.2 bits (92), Expect = 4e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 120227 TGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGA- 120285 |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 351 TGCCCCTATAGCTCAGCTGGTAGAGCAACTGATTTGTAATCAGTAGGTCCGCGGTTCGAG 292 Query 120286 TCCCTGATGCCGGCACCA 120303 ||| || || ||||||| Sbjct 291 TCCGTG-TGGGGGCACCA 275 >seq1936 Length=2622 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/77 (86%), Gaps = 4/77 (5%) Strand=Plus/Minus Query 120234 ATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGAT 120293 |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| | Sbjct 1015 ATAGCTCAGCTGGTAGAGCAACTGACTTTTAATCAGTAGGTCCAGGGTTCGAACCC--CT 958 Query 120294 GCCGG--CACCATATTC 120308 | ||| |||||| ||| Sbjct 957 GTCGGCTCACCATTTTC 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825745659715080