Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq308 109 4e-19 seq578 91.5 1e-13 seq16 91.5 1e-13 >seq308 Length=10359 Score = 109 bits (120), Expect = 4e-19 Identities = 147/203 (72%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 94572 GAACGACAGCCGCGA--GGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAG 94629 |||||||| ||||| ||||| ||| |||||| || ||||||||||| | | Sbjct 4587 GAACGACA--CGCGACCGGGCATGTTCGACTTGATCAGACCCGTCACCACGTTTGCCTGC 4530 Query 94630 GGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGG 94689 || ||||||||||| |||| || || |||||| |||||||||| |||||||||||||| Sbjct 4529 GGACGCTGCGTCGCGAGGATCAGGTGGATGCCGACCGCACGCGCTTTCTGCGCGATGCGC 4470 Query 94690 ACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCC 94749 || || | | || || || || ||| |||||||||||| ||||| || || Sbjct 4469 ACGATCGCGCCTTCCACTTCCTTGTTG------GTCATCATGAGGTCGGCGAGCTCGTCG 4416 Query 94750 ACCACTACCACGATGTAGGGGAG 94772 | ||| | || ||||| || || Sbjct 4415 ATCACGAAGACCATGTACGGCAG 4393 >seq578 Length=6702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 208/307 (68%), Gaps = 16/307 (5%) Strand=Plus/Plus Query 94809 CATCTGCCGGTATCGGTCGTCCATCTCTACGGTGAGCCACCGCAGCGTTTTCACCGCCTC 94868 ||||| || || ||||| |||||||| | || ||| ||||| ||||| | Sbjct 753 CATCTTGCGATAGCGGTCTTCCATCTCGCCCACGACCCATTTCAGCGCGACAACCGCTTT 812 Query 94869 GTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTC 94928 | | || || || ||||| ||| ||||| ||||| |||| || || ||||| Sbjct 813 TTTCGGGTCGGTCACAACGGGGCTGAGCAGGTGCGGGATGCCGTCATAGACGGAAAGCTC 872 Query 94929 GACACAT-TTGGGGTCGATCATGATGAGTTTGACCC-GATCA---GGGGTCGCCCGGTAG 94983 || ||| |||||||||||||||| || || | |||| |||||| | ||| Sbjct 873 GAG-CATCTTGGGGTCGATCATGACAAG----ACGCAGATCCTGCGGGGTCAGCTTGTAA 927 Query 94984 AGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCC 95043 |||||||| | | ||| | |||||| | || || ||||| ||||| | ||| || Sbjct 928 AGCAGCGACAGGATCATGGTATTGATGGCGACCGATTTACCCGACCCGGTGGTGCCCGCG 987 Query 95044 ACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGAGACGTCC---TTACCCTCGACGTCC 95100 | |||||| || ||||||||||| ||||| || ||| || | || ||| |||| Sbjct 988 ATCAGCAGGTGGGGCATCTTGGCGAGGTT---GGCGACCACCGGGTCGCCGCCGATGTCC 1044 Query 95101 TTGCCCA 95107 ||||||| Sbjct 1045 TTGCCCA 1051 >seq16 Length=58024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 94594 TTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGA 94653 |||| ||||||| ||| || | ||||| || || || || ||||| || || | Sbjct 16160 TTGC-CTTGATGGTGCCGGTGATGACATCAACCGACGGGCGTTGCGTGGCGGTGATCATG 16218 Query 94654 TGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTC 94713 |||||||||||||| |||||| ||||||||| || |||| ||| |||| |||| Sbjct 16219 TGAATGCCGGCCGCGCGCGCCATCTGCGCGAGACGTTGAATGGCGGCTTCAATCTCT--- 16275 Query 94714 TTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGG 94769 ||| || ||||||||||||| || | ||| || || | || ||||| ||||| Sbjct 16276 TTGCCCGCAACCATCATGAGGTCGGCCATTTCGTCAACAATGACGACGATATAGGG 16331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340052884489136