Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4708 140 4e-28 seq339 109 7e-19 seq5801 107 2e-18 seq4240 100 4e-16 seq6198 95.1 2e-14 >seq4708 Length=1380 Score = 140 bits (154), Expect = 4e-28 Identities = 337/502 (67%), Gaps = 26/502 (5%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||||||||||||||| | || || |||||||| || ||| || || ||| Sbjct 721 CGGTCAAAACGACCCGGGCGCAAAAGCGCCGGATCAAGGACGTCTGGGCGGTTCGTTGCC 662 Query 11510 GCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 |||| || | ||||| |||||| ||||| ||||||||||| | || || Sbjct 661 GCAACAATGATGATGCC---TTCATTGGCTTCAAAACCATCCATCTCAACCAATAGCTGG 605 Query 11567 TTAATTGTTTGTTCTCTCTCATCATT--TGCTGGCATACCACCAGCACTGCGTTGCTTGC 11624 || | |||||| || | ||||||||| || | | | |||||| | |||| || Sbjct 604 TTCAATGTTTGCTCGCGCTCATCATTACCGCCGCC--AAGACCAGCGCCGCGTGAACGGC 547 Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATT 11680 | ||||| ||||| || ||||| |||| ||||| || || ||| || || Sbjct 546 CGACCGCGTCAATTTCGTCAATAAAGATGATACAAGGCGCATTACGTTTGGCTTGC---- 491 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 || || | ||||| || | |||| || ||||| ||||||||||| ||||| | | Sbjct 490 TCGAACATGTCGCGGACACGGCTGGCGCCTACACCGACAAACATCTCTACAAAATCAGAC 431 Query 11741 GCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 | || | || || ||||||||| || |||||| || || || |||||||| ||||| Sbjct 430 CCTGA-AATTGTGAAGAATGGGACGCCTGCTTCACCAGCAATCGCACGGGCGAGAAGGGT 372 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTT---GGCACCACT 11856 || || || |||||| || || || |||||| |||||| || | || || Sbjct 371 TTTACCTGTTCCTGGCGGTCCAATCAGGAGTGCGCCTTTGGGGATTTTACCGCCAAGACG 312 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 | || | | || || | || || || || |||| |||||| | ||| ||||| || Sbjct 311 TTGGAATTTTGTC---GGATCTTTCAGGAAGTCGACAACCTCTTCCAATTCTTCTTTTGC 255 Query 11917 CGCGTCAATCCCCTCAACATCA 11938 | |||| || |||||||| Sbjct 254 TTCATCAACGCCTGCAACATCA 233 >seq339 Length=9696 Score = 109 bits (120), Expect = 7e-19 Identities = 251/375 (67%), Gaps = 20/375 (5%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||||||||| || || || || || || || | ||| || || || || Sbjct 3355 CGGTCAAAACGACCGGGACGCAGCAGCGCCGGGTCCAGAACGTCCGGACGGTTGGTCGCT 3296 Query 11510 GCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 ||||| | | |||| | |||||| ||||||||||||||||| || || || Sbjct 3295 GCAATCAGGATGATGC---TTTCATTGGGCTCAAAGCCATCCATCTCCACCAGCAACTGG 3239 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTG 11623 || | ||| ||||| | ||||||||| | | ||| || |||| || || Sbjct 3238 TTGAGTGTCTGTTCGCGCTCATCATTACC---CCCGCCAAGTCCGGCACCACGATGGCGA 3182 Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATG----GTTGATTTTCGCGGGCGAT 11679 || ||||||||||||||||| ||||||| || || | ||| | ||||| || Sbjct 3181 CCGACCGCATCAATCTCATCGATGAAGATGATGCAAGGTGAGTTCTTCTTCGCCTGC--- 3125 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 || || | ||||| || | | ||||| || || |||||||| || ||||||| | Sbjct 3124 -TCGAACATGTCGCGCACGCGGCTCGCACCGACGCCTACAAACATTTCAACAAAGTCAGA 3066 Query 11740 GGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 | || | || ||| || ||||| | ||| || || ||||| || || || || || Sbjct 3065 ACCGGAAATCGTGAAGAACGGCACATTCGCTTCGCCTGCAATGGCCCGCGCCAGCAGCGT 3006 Query 11800 CTTTCCCGTACCTGG 11814 ||| || |||||||| Sbjct 3005 CTTACCAGTACCTGG 2991 >seq5801 Length=1198 Score = 107 bits (118), Expect = 2e-18 Identities = 312/473 (66%), Gaps = 12/473 (3%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| ||||| || | | || |||||| | ||| ||| || |||||| Sbjct 467 CGGTCAAAACGGCCCGGCCGTAACAACGCAGGATCAAGCACATCTTTGCGGTTTGTGGCC 408 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || || | | | || | | ||||| ||||||||||| | | || || Sbjct 407 GCGATGATGATCACACCTTCGTTAGCTTCAAAACCATCCATCTCAACCAACAGCTGGTTG 348 Query 11570 ATTGTTTGTTCTCTCTCATCATTT--GCTGGCATACCACCAGCACTGCGTTGCTTGCCCA 11627 | |||||||| | ||| || || || | |||| | |||||| || || || | Sbjct 347 AGCGTTTGTTCGCGCTCGTCGTTACCGCCGCCATAGC--CAGCACCACGGTGACGACCGA 290 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 ||||||| || || || || || |||||||||||| ||| | ||| |||||| | Sbjct 289 CCGCATCGATTTCGTCGATAAACACAATACATGGTGCATTCTTCTTGGCCTGTTCAAACA 230 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 || || || | ||||||| ||||| || ||||| || ||||||| | | ||| Sbjct 229 TGTCACGCACACGGCTGGCACCGACACCCACGAACATTTCAACAAAGTCAGACCCCGAG- 171 Query 11748 ACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 ||| | |||||||||| | || ||||||||||| || || || ||||| || || Sbjct 170 -ATGGTAAAGAATGGGACACCCGCCTCGCCCGCGATGGCGCGCGCCAGCAGGGTTTTACC 112 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTC--CAAAA 11863 |||||| || || | || | ||| ||| ||||| || | || | | || Sbjct 111 CGTACCCGGAGGTCCTTCAAGCAAGGCACCTTTCGGGATTTTACCGCCGAGGCGGCTGAA 52 Query 11864 TATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 | ||| |||||| | || || || ||||| |||||||| || ||||| || Sbjct 51 TTTCT-GCGGGTTAC-GCAGGAATTCGACAATTTCTTCAAGCTCTTCTTTAGC 1 >seq4240 Length=1484 Score = 100 bits (110), Expect = 4e-16 Identities = 209/309 (68%), Gaps = 12/309 (4%) Strand=Plus/Plus Query 11546 TCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA 11605 ||||||||| || | || || | ||||| || | ||||||||| | || ||| Sbjct 2 TCCATCTCGACCAGCAGCTGGTTCAGCGTTTGCTCACGCTCATCATTGCC--GCCGCCCA 59 Query 11606 --CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT- 11662 || || | ||| ||| ||| || ||||| ||||| || ||||| ||||| || ||| Sbjct 60 GGCCCGCGCCGCGGTGCCGGCCAACGGCATCGATCTCGTCGATGAAAACAATGCAGGGTG 119 Query 11663 ---TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 | |||| || || ||||| | ||||| || | |||| || || || ||| Sbjct 120 CGTTCTTTTTTGCCTGC----TCAAACATGTCGCGCACGCGGCTGGCGCCAACGCCTACA 175 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 ||||| || || |||| | | || | || ||| || ||||| | |||||||||| Sbjct 176 AACATTTCGACGAAGTCGGACCCGGAAATCGTGAAGAACGGCACATTGGCTTCACCCGCG 235 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || ||||| || | |||||| || || || || ||| | || || ||||| || Sbjct 236 ATCGCGCGGGCCAGCAAGGTCTTGCCGGTGCCCGGGGGGCCCACAAGCAGCGCGCCGCGC 295 Query 11840 GGGATCTTG 11848 || |||||| Sbjct 296 GGAATCTTG 304 >seq6198 Length=1149 Score = 95.1 bits (104), Expect = 2e-14 Identities = 235/351 (67%), Gaps = 12/351 (3%) Strand=Plus/Plus Query 11402 AAAATCTTCTTGCGACCTCGCACACTTGGAAGACCCACTTGGATCTTGCGATCAAAACGA 11461 ||||||| || ||||||| ||| ||| | ||| || | || || ||||| || Sbjct 683 AAAATCTGCTCGCGACCTTTAACATCTGGTAAACCTACCACTACCTGACGGTCAAACCGG 742 Query 11462 CCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACA 11521 ||||| || | | || ||||| | ||| || || ||||| |||||||| | Sbjct 743 CCCGGACGCAATAACGCCGGGTCAAGCACATCTGGCCGGTTGGTGGCAGCAATAACAATG 802 Query 11522 ATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGT 11578 || || |||||| |||||||||||||| || || | || || | ||||| Sbjct 803 ATACCT---TCATTGCCATCAAAGCCATCCATTTCTACCAGCATCTGGTTTAAGGTTTGC 859 Query 11579 TCTCTCTCATCATTTGCTG-GCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAAT 11637 || | |||||| | | || || ||| |||| || || || ||||||||||| Sbjct 860 TCGCGCTCATCGTGGCCACCGCCTAA-ACCGGCACCACGCTGGCGACCTACCGCATCAAT 918 Query 11638 CTCATCAATGAAGACAATACATGGT--TGATTTTCGCGGGCGATTTCAAAGAGATCGCGA 11695 ||||| ||||||| ||||| ||| || |||| ||| ||||| | || ||| Sbjct 919 TTCATCGATGAAGATGATACAGGGTGATGCTTTTTT--GGCTTGCTCAAACATGTCACGA 976 Query 11696 ACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 || | |||||| |||||||||||||| || ||||||| | | ||||| Sbjct 977 ACACGCGAGGCACCAACACCAACAAACATTTCAACAAAGTCAGAGCCAGAG 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627901863919200