Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4708 145 9e-30 seq5801 120 4e-22 seq339 116 4e-21 seq6198 102 1e-16 >seq4708 Length=1380 Score = 145 bits (160), Expect = 9e-30 Identities = 340/505 (67%), Gaps = 26/505 (5%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||| ||||| ||||| || || | ||||| |||||||| || ||| ||||| Sbjct 725 CTGACGGTCAAAACGACCCGGGCGCAAAAGCGCCGGATCAAGGACGTCTGGGCGGTTCGT 666 Query 9580 CGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAG 9636 || || | | | || ||| ||||| ||||||||||||||||| ||| || Sbjct 665 TGCCGCAACAATGATGATGCCT---TCATTGGCTTCAAAACCATCCATCTCAACCAATAG 609 Query 9637 TTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGC 9694 ||||| | ||||| || || |||||||| ||| | || |||||| | |||| Sbjct 608 CTGGTTCAATGTTTGCTCGCGCTCATCATTACCGCCGCCAAG--ACCAGCGCCGCGTGAA 551 Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT----TTCGCGAGC 9750 || || || ||||| || ||||| |||| ||| || || ||| || || || Sbjct 550 CGGCCGACCGCGTCAATTTCGTCAATAAAGATGATACAAGGCGCATTACGTTTGGCTTGC 491 Query 9751 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9810 || || | || || ||||| ||||||| ||||| ||||||||||| ||||| | Sbjct 490 ----TCGAACATGTCGCGGACACGGCTGGCGCCTACACCGACAAACATCTCTACAAAATC 435 Query 9811 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 9869 | | ||| |||| || ||| ||||| | |||||| ||||| || |||||||||| Sbjct 434 AGACCCTGAA-ATTGTGAAGAATGGGACGCCTGCTTCACCAGCAATCGCACGGGCGAGAA 376 Query 9870 GAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-- 9927 | || ||||| || |||||| || ||||| || ||| || || || |||| Sbjct 375 GGGTTTTACCTGTTCCTGGCGGTCCAATCAGGAGTGCGCCTTTGGGGATTTTACCGCCAA 316 Query 9928 -ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTT 9986 || | || | | || || | || || || || |||| ||||||||||| |||| Sbjct 315 GACGTTGGAATTTTGTC---GGATCTTTCAGGAAGTCGACAACCTCTTCCAATTCTTCTT 259 Query 9987 TGGCGGCGTCAATCCCCTCAACATC 10011 | || | |||| || ||||||| Sbjct 258 TTGCTTCATCAACGCCTGCAACATC 234 >seq5801 Length=1198 Score = 120 bits (132), Expect = 4e-22 Identities = 259/379 (68%), Gaps = 14/379 (4%) Strand=Plus/Minus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 || || ||| ||||| || || || || | | ||| |||||| | ||| ||| || Sbjct 474 GACCTGACGGTCAAAACGGCCCGGCCGTAACAACGCAGGATCAAGCACATCTTTGCGGTT 415 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9633 || || ||||||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 414 TGTGGCCGCGATGATGATCACACCT---TCGTTAGCTTCAAAACCATCCATCTCAACCAA 358 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGT 9691 || ||||| | |||||||| || || || || ||| | |||| ||||||| || Sbjct 357 CAGCTGGTTGAGCGTTTGTTCGCGCTCGTCGTTACCGCCGCCATA--GCCAGCACCACGG 300 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGC 9750 || || || ||||| || || || || || || || |||||| ||| ||| | || Sbjct 299 TGACGACCGACCGCATCGATTTCGTCGATAAACACAATACATGGTGCATTCTTCTTG-GC 241 Query 9751 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9810 |||||| | || || ||||| |||| || ||||| || ||||| || ||||||| Sbjct 240 CTGTTCAAACATGTCACGCACACGGCTGGCACCGACACCCACGAACATTTCAACAAAGTC 181 Query 9811 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 9869 | | | | || | | ||| |||||| | || ||||| ||||| || || || | Sbjct 180 AGACCCCG-AGATGGTAAAGAATGGGACACCCGCCTCGCCCGCGATGGCGCGCGCCAGCA 122 Query 9870 GAGTCTTACCCGTACCTGG 9888 | || ||||||||||| || Sbjct 121 GGGTTTTACCCGTACCCGG 103 >seq339 Length=9696 Score = 116 bits (128), Expect = 4e-21 Identities = 257/378 (68%), Gaps = 18/378 (5%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||| ||||| ||||| ||||| || ||||| || || | || || || || Sbjct 3359 CTGACGGTCAAAACGACCGGGACGCAGCAGCGCCGGGTCCAGAACGTCCGGACGGTTGGT 3300 Query 9580 CGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAG 9636 ||| || || | | || | ||||||| ||||| ||||||||||| || | Sbjct 3299 CGCTGCAATCAGGATGATGC---TTTCATTGGGCTCAAAGCCATCCATCTCCACCAGCAA 3243 Query 9637 TTGGTTAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCT 9695 ||||| | || ||||| || |||||||| | | || | || |||| || || Sbjct 3242 CTGGTTGAGTGTCTGTTCGCGCTCATCATTACCCCCGCCAAGT-CCGGCACCACGATGGC 3184 Query 9696 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCG 9751 || || |||||||||||||| ||||||| |||||| | ||| | ||||| || Sbjct 3183 GACCGACCGCATCAATCTCATCGATGAAGATGATGCAAGGTGAGTTCTTCTTCGCCTGC- 3125 Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811 || || | || || || || | || || || || |||||||| || ||||||| Sbjct 3124 ---TCGAACATGTCGCGCACGCGGCTCGCACCGACGCCTACAAACATTTCAACAAAGTCA 3068 Query 9812 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 | ||||| || | || ||| || ||||| | ||| || |||||||| || || || || Sbjct 3067 GAACCGGAA-ATCGTGAAGAACGGCACATTCGCTTCGCCTGCAATGGCCCGCGCCAGCAG 3009 Query 9871 AGTCTTACCCGTACCTGG 9888 |||||||| |||||||| Sbjct 3008 CGTCTTACCAGTACCTGG 2991 >seq6198 Length=1149 Score = 102 bits (112), Expect = 1e-16 Identities = 284/424 (67%), Gaps = 20/424 (5%) Strand=Plus/Plus Query 9476 AAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGA 9535 || |||| |||||| || |||| ||| | | |||| | || ||| ||||| || Sbjct 683 AAAATCTGCTCGCGACCTTTAACATCTGGTAAACCTACCACTACCTGACGGTCAAACCGG 742 Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || ||||| | | ||| ||||| | ||| || || || || || || |||| Sbjct 743 CCCGGACGCAATAACGCCGGGTCAAGCACATCTGGCCGGTTGGTGGCAGCAATAACAATG 802 Query 9596 ATACCTGTTTCATT---ATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGT 9652 |||||| ||||| |||||| |||||||| ||| || | ||||| | ||||| Sbjct 803 ATACCT---TCATTGCCATCAAAGCCATCCATTTCTACCAGCATCTGGTTTAAGGTTTGC 859 Query 9653 TCCCGTTCATCATTCGCTG-GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAAT 9711 || || ||||| | | || || ||| |||| || || || || |||||||| Sbjct 860 TCGCGCTCATCGTGGCCACCGCCTAA-ACCGGCACCACGCTGGCGACCTACCGCATCAAT 918 Query 9712 CTCATCAATGAAGACGATGCATGGT--TGATTTTC--GCGAGCGACTTCAAAGAGATCCC 9767 ||||| ||||||| ||| || ||| || |||| || || ||||| | || | Sbjct 919 TTCATCGATGAAGATGATACAGGGTGATGCTTTTTTGGCTTGC----TCAAACATGTCAC 974 Query 9768 GTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGG 9826 | |||||| ||| || |||||||||||||| || ||||||| | | | || | | | Sbjct 975 GAACACGCGAGGCACCAACACCAACAAACATTTCAACAAAGTCAGAGCCAGAGATAGT-A 1033 Query 9827 ATGAAGGGGACATTAGATTCACCCGCAAT-GGCTCGGGCGAGAAGAGTCTTACCCGTACC 9885 | ||| || || || | ||| || ||||| | || | | | ||| || ||||| ||||| Sbjct 1034 AAGAAAGGTACTTTCGCTTCGCCGGCAATAGCCTTAGCCAACAAG-GTTTTACCGGTACC 1092 Query 9886 TGGC 9889 ||| Sbjct 1093 CGGC 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583139941071480