Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq388 136 1e-27 seq341 95.1 5e-15 >seq388 Length=8708 Score = 136 bits (150), Expect = 1e-27 Identities = 372/559 (67%), Gaps = 18/559 (3%) Strand=Plus/Minus Query 4539 AGGCGGCGGCGACCATGC-GCATGGGCGGCGGCATCGGCTACGACTTCTCCACCCTGCGC 4597 |||| ||| ||| |||| ||| ||||||||| |||||||| || ||| ||| | || Sbjct 2140 AGGCTGCGCTGACAATGCAGCA-GGGCGGCGGGATCGGCTATGATTTCAGCACGATCCGG 2082 Query 4598 CCCAAGGGCGACCTCATCG-TCAA-GCTGCAGTCCCGCAG--CTCCGGCCCCATCTCCTT 4653 |||||||| | || | |||| | || | || | ||| || || | ||||| Sbjct 2081 CCCAAGGGGG----CAGGGGTCAAAGGTGTGGCGGCGGATGCCTCGGGGCCATTGTCCTT 2026 Query 4654 CATGGAGATTTTCGACGCAGTCTGCCGCTGCACGTCCTCGTCCGGCCACCGGCGTGGCGC 4713 |||||| | | ||||| | |||||| || ||| | || ||||| || || Sbjct 2025 CATGGATGTGTGGGACGCGATGTGCCGCACCATCATGTCGGCAGGGTCGCGGCGCGGTGC 1966 Query 4714 GCAGATGGGCGTCC-TGCGCATCGACCACCCCGACATCTTCGACTTCGTCCGCGCCAAGC 4772 | ||||| || | ||||| ||| ||||| || ||| || ||| || | |||||| Sbjct 1965 GATGATGG-CGACGATGCGCTGCGATCACCCGGATATCGAGGATTTCATCGGGGCCAAGG 1907 Query 4773 AGAACGAGACCTTCCTGCGCGGCTTCAACATCTCCATCGCCGTCACGGACGAGTTCATGC 4832 | | | | | |||||| |||||| | || | ||||||||| || || ||| Sbjct 1906 CGGATGCGGCACGGCTGCGCATGTTCAACCTGTCGGTGCTCGTCACGGATGACTTTATGG 1847 Query 4833 GGGC---CAAGCGCGACGGCAAGCCCTTCCAGCTGAAGTTCGGCGGCCGCGTCTACCGCG 4889 || |||| ||||| | | | | || || | |||| ||||||||| Sbjct 1846 AAGCGGTCAAGACGGACGG---GTCATGGGATTTGGTCTTTGACGGCAAGGTCTACCGCA 1790 Query 4890 AGGTGGACCCCAACGAGCTGTGGGACGCGGTCATGCGCTCCACCTGGGACTGGGCCGAGC 4949 ||| | | ||| |||||| || ||||||||| | |||| || | ||||| | Sbjct 1789 CTGTGCAGGCACGCGATCTGTGGAACCGCGTCATGCGCGCGACCTATGATTATGCCGAAC 1730 Query 4950 CGGGCGTCCTGTTCATCGACCGCATCAACGAGATGAACAACCTCCACTACTGCGAGACCA 5009 | ||||| | || |||||||| ||||| || |||||||| ||| |||||||| Sbjct 1729 CCGGCGTGATCTTTATCGACCGGATCAATCAGGCCAACAACCTGAGCTATGTCGAGACCA 1670 Query 5010 TCGCGGCGACCAACCCGTGCGGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGCCTGCTCG 5069 |||||||||| ||||| || || || || || ||||| || | || ||||||||||| | Sbjct 1669 TCGCGGCGACAAACCCCTGTGGTGAACAACCCCTGCCGCCCTATGGTGCCTGCCTGCTGG 1610 Query 5070 GCTCCTTCAACCTGGTGCG 5088 | || ||||| ||| ||| Sbjct 1609 GGTCGATCAACATGGCGCG 1591 >seq341 Length=9621 Score = 95.1 bits (104), Expect = 5e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 4867 GTTCGGCGGCCGCGTCTACCGCGAGGTGGACCCCAACGAGCTGTGGGACGCGGTCATGCG 4926 ||| | ||| || || |||||| | |||| | || |||||| || | | |||| Sbjct 6895 GTTTGACGGGCGGGTGTACCGCACGTTGGATGCGCGTGATCTGTGGAACCGGATTATGCA 6836 Query 4927 CTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATCGACCGCATCAACGAGATGAA 4986 | || | || | ||||||||||| || | ||||||||||| ||||||| | || Sbjct 6835 GGCGACGTTCGAATACGCCGAGCCGGGGGTGATTTTCATCGACCGGATCAACGCGGCCAA 6776 Query 4987 CAACCTCCACTACTGCGAGACCATCGCGGCGACCAACCCGTGCGGCGAGCAGCCGCTGCC 5046 |||||| | || |||||||| || ||||| || ||||| || || ||||| || |||| Sbjct 6775 CAACCTGAATTATTGCGAGACGATTGCGGCAACGAACCCTTGTGGGGAGCAACCCTTGCC 6716 Query 5047 ACCGTTCGGCGCCTGCCTGCTCGGCTC 5073 || | || ||||| |||| || || Sbjct 6715 GCCCTATGGGGCCTGTTTGCTGGGTTC 6689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187479886966326