Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq3519 192 2e-44 seq11188 127 7e-25 seq45 127 7e-25 seq2710 123 8e-24 seq912 100 9e-17 >seq3519 Length=1701 Score = 192 bits (212), Expect = 2e-44 Identities = 303/427 (71%), Gaps = 18/427 (4%) Strand=Plus/Plus Query 40009 CTTGGTCAGCTTCTCGCC--GACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTC 40066 ||||| |||||| ||| | |||| | ||| |||| || | || || ||| | ||| | Sbjct 285 CTTGGACAGCTTGTCGGCCAGACC--GTAGGACTTGCCCTGTACCCGCGCCACATCCCGC 342 Query 40067 ATC---GCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACC--TTGTCGG 40121 | | || ||| |||| || | | ||||||| |||||||| ||| || ||| Sbjct 343 ACCACCGCCTTGGCCGCCATGGTAC---CGAAGGTAATGATCTGTGAAACCGCTTCCCGG 399 Query 40122 CCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATC--GAAGTC 40179 || ||| ||||| | ||| || ||| | | || ||| ||| ||| || Sbjct 400 CC--GTATTTCTCAGCCGTGTATTCAATCACCCGGTCCCG--GCCTTCCATGCAGAAATC 455 Query 40180 GATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCC 40239 || ||||| ||||||||||||||| || || |||||||||||||||||||| | || | Sbjct 456 GACGTCAAAGTCGGGCATGGACACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTC 515 Query 40240 GTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGC 40299 || ||||||||| || |||||||| ||| || |||||| ||||| |||||||| | Sbjct 516 GTACTCCAGTGGGTCCAGGTCGGTAATCAGCAGCGCGTAGGCCACCAGGGAACCGGCACC 575 Query 40300 CGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGC 40359 || || || || || || ||| || ||||| | ||||||||| ||| ||||| Sbjct 576 GGAACCCCGGCCGGGCCCTACCGGTACACCGTTGTTCTTGGCCCACTTGATAAAGTCCAT 635 Query 40360 GACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAG 40419 |||| |||||||||| |||||||||||||| ||||| ||||| | |||| ||| || Sbjct 636 AACGATCAGGAAGTAGCCTGGGAAGCCCATCTGAATGATGATGTCCAGCTCGAACTTCAG 695 Query 40420 CTGCTTG 40426 ||||| Sbjct 696 GCGCTTG 702 >seq11188 Length=750 Score = 127 bits (140), Expect = 7e-25 Identities = 238/348 (68%), Gaps = 4/348 (1%) Strand=Plus/Plus Query 40075 GCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTC 40134 ||| |||| || | || ||||| |||||| |||||| ||| | ||||| || Sbjct 202 GCGAGCCTGGAGCGTACCAAAGGTGATGATCTGCGCGACCCGGTCATCGCCGTAGCGATC 261 Query 40135 GGTGACGTACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCG 40192 | || || ||||| ||||||||||| || || | || |||||||| ||| | ||| Sbjct 262 CCTCACATAGCGGATCACCTCGCCGCGCCGATCCTGACA--GAAGTCGACGTCGAAGTCT 319 Query 40193 GGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGA 40252 ||||| ||||| || |||||||| ||||| ||||| || | | |||| | || ||| Sbjct 320 GGCATCGACACACGTTCGGGGTTGAGGAAACGCTCAAACAGCAACCCGAACCGAAGCGGA 379 Query 40253 TCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCA 40312 || || ||||| ||| ||| ||||||||||||| || || | || || ||||| Sbjct 380 TCAAGATCGGTAATCGTGAGCGCCCAGGCGACCAGCGAGCCAGCGCCTGAACCCCGCCCT 439 Query 40313 GGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAG 40372 || || ||| | | | ||| ||||| ||| ||||| | |||| |||||| Sbjct 440 GGTCCCACCGGAATATCCTGAGACTTTGCCCACTGGATAAAGTCCGAAACGATCAGGAAA 499 Query 40373 TAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGC 40420 || || || ||||||| ||| ||| | | |||||| | |||| Sbjct 500 TAACCAGGAAACCCCATCTTTTCGATGATGCCCAGCTCGTAATCGAGC 547 >seq45 Length=31681 Score = 127 bits (140), Expect = 7e-25 Identities = 219/313 (70%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 ||||| || |||||| || |||| |||| || || || || || ||||| Sbjct 23761 CCGAAAGTGATGATCTGAGCCACCTGGTCGTGGCCATAGCGATCCTGCACATAGCGGATC 23820 Query 40151 ACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 ||||| |||| || || | || |||||||||||||| ||| ||||| ||||| |||| Sbjct 23821 ACCTCATCGCGGCGGTCCTGACA--GAAGTCGATGTCAAAGTCAGGCATCGACACACGCT 23878 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGC--TC-CAGTGGATCGAGGTCGGTGA 40265 | ||||||| |||||||| || | ||| || || ||| || || || || |||| Sbjct 23879 CAGGGTTCAAAAACCGCTCAAACAGGAG---GTTAAATCGCAGCGGGTCCAGATCTGTGA 23935 Query 40266 TCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACA 40325 | || ||||||||| ||| ||||| | || || || || ||||| ||| | Sbjct 23936 TGGTCAGCACCCAGGCGACCACCGACCCGGCGCCTGACCCACGGCCCGGACCCACCGGGA 23995 Query 40326 CGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGC 40385 ||| ||||||||||| |||||||||||| |||| |||||||||| || || Sbjct 23996 TATCGTGATCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTAGCCTGGAAAAT 24055 Query 40386 CCATCTGGATGAT 40398 |||| | |||||| Sbjct 24056 CCATATTGATGAT 24068 >seq2710 Length=2059 Score = 123 bits (136), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 40175 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40234 ||||||||||| | ||||||||| || || ||||| ||||||||||||||||| || | Sbjct 2011 AAGTCGATGTCGAAGTCGGGCATCGATACCCGCTCAGGGTTCAGGAACCGCTCAAACAGC 1952 Query 40235 AGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAACC 40293 ||| | ||| ||||| ||||| || ||| || ||| || || || ||||| || Sbjct 1951 AGCGAATATCGCAGCGGATCAAGGTCAGTAATCGTTAGCGCA-TAAGCCACAAGCGACCC 1893 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 || |||| || || ||||| || || | ||| | || ||| |||| ||| || Sbjct 1892 CGCGCCCGACCCCCGGCCAGGCCCCACGGCGATGCCCTGATCTTTGCCCCACTGGATAAA 1833 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCAT---CTGGATGAT 40398 |||||| |||| |||||| ||| ||| |||||||| || |||||| Sbjct 1832 GTCGGCAACGATCAGGAAATAGCCCGGAAAGCCCATGCCCTCGATGAT 1785 >seq912 Length=4712 Score = 100 bits (110), Expect = 9e-17 Identities = 212/312 (68%), Gaps = 7/312 (2%) Strand=Plus/Minus Query 39026 GCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCG 39085 |||||| ||||| |||||| || || ||| || | || || ||||| || | | || Sbjct 1279 GCCATGAACTCGACCGGGTGGTTCGCCTTGAGCCATGCTGTCTGGTAGCTGACCACCGCG 1220 Query 39086 TACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCAC 39145 || || |||| ||| | ||||||||| |||| |||||| | |||| ||| || Sbjct 1219 TAGGCAGCAGCGTGGGATTTGTTGAAGCCGTAATTGGCGAATTTCTCCAGCAGGTCGAAC 1160 Query 39146 ACCGCCTGGATGGCGCTGTCCGAGTA---GCCTCGCTCGCGCGCTCCCTTCTGGAAGTTC 39202 ||| | ||| ||| | | || | ||| ||| ||| ||||| | ||| ||| Sbjct 1159 ACCTC--GGA-GGCTTTCTTCGCCTCAACGCCGTTCTCTGCCGCGCCCTTTTCGAATTTC 1103 Query 39203 ACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCG 39262 | || | ||| |||| |||| || ||||| || ||||||||||||||| Sbjct 1102 GGGCGTTCGGCGTCCATTGCCTCTTTGATCTTTTTACCCATCGCACGACGCAGCAGGTCG 1043 Query 39263 GCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAG 39322 || ||| ||||||||||| || | || |||||| || | |||||| ||||| ||| Sbjct 1042 GCACCGCCAAGGCTGTAGCCCGCCATGACCTGCGCAATCTGCATCACCTGTTCCTGATAG 983 Query 39323 ATGATGA-GCCC 39333 | ||||| |||| Sbjct 982 ACGATGATGCCC 971 Score = 95.1 bits (104), Expect = 4e-15 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 || ||||| |||||| | |||||||||| || || || || ||||| ||||| Sbjct 205 CCAAAGGTGATGATCTGGCCCACCTTGTCGGTGCCATATTTGTCCTGAACGTAGCGGATC 146 Query 40151 ACCTCGCCGCGACGCCGGTC-ATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207 ||||| | ||| ||||| || |||||||||||| | ||| ||||| || || || Sbjct 145 ACCTCTTC---ACGGCGGTCCATGCAGAAGTCGATGTCGAAGTCCGGCATAGAAACACGT 89 Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGAT 40266 |||||||| |||||||| ||||| | ||| | || ||| |||||||||||||| Sbjct 88 TCGGGGTTGAGGAACCGTTCGAACAGAAGCTGATAGCGCAATGGGTCGAGGTCGGTGAT 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160374823699398