Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq3519 131 5e-26 seq11188 125 2e-24 seq45 98.7 3e-16 seq912 96.9 1e-15 seq2710 95.1 4e-15 >seq3519 Length=1701 Score = 131 bits (144), Expect = 5e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 ||| |||| ||| | |||||||||||| || || || |||||||||||||||||||| | Sbjct 450 GAAATCGACGTCAAAGTCGGGCATGGACACCCGTTCCGGGTTCAGGAACCGCTCGAACAG 509 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || ||| | |||||||||||||| ||| || ||||| || |||| || || Sbjct 510 CAGGTCGTACTCCAGTGGGTCCAGGTCGGTAATCAGCAGCGCGTAGGCCACCAGGGAACC 569 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | || || || || || || ||| || ||||| | ||| ||||| ||| || Sbjct 570 GGCACCGGAACCCCGGCCGGGCCCTACCGGTACACCGTTGTTCTTGGCCCACTTGATAAA 629 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39320 ||| |||| |||||||| ||||| |||||||| |||| ||||| | |||| | Sbjct 630 GTCCATAACGATCAGGAAGTAGCCTGGGAAGCCCATCTGAATGATGATGTCCAGCTCGAA 689 Query 39321 CT 39322 || Sbjct 690 CT 691 >seq11188 Length=750 Score = 125 bits (138), Expect = 2e-24 Identities = 218/317 (69%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 39009 GATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39068 |||||| |||||| |||| |||||| || | || || |||||||| ||||| || Sbjct 229 GATCTGCGCGACCCGGTCATCGCCGTAGCGATCCCTCACATAGCGGATCACCTCGCCGCG 288 Query 39069 GCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAA 39128 ||| | | |||||||| ||| | ||| ||||| || ||||| || ||||| ||||| Sbjct 289 CCGATCCTGACAGAAGTCGACGTCGAAGTCTGGCATCGACACACGTTCGGGGTTGAGGAA 348 Query 39129 CCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGC 39188 ||||| || | | |||| | | || || || ||||| ||| ||| || | || Sbjct 349 ACGCTCAAACAGCAACCCGAACCGAAGCGGATCAAGATCGGTAATCGTGAGCGCCCAGGC 408 Query 39189 GGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGC 39248 | ||||||||||||| | || || ||||| || || ||| | | | ||| || Sbjct 409 GACCAGCGAGCCAGCGCCTGAACCCCGCCCTGGTCCCACCGGAATATCCTGAGACTTTGC 468 Query 39249 CCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCAT 39308 ||| ||| ||||| | |||| ||||| || || |||||||||| | ||| || Sbjct 469 CCACTGGATAAAGTCCGAAACGATCAGGAAATAACCAGGAAACCCCATCTTTTCGATGAT 528 Query 39309 GTCGATCTCGTACTCGA 39325 | | | |||||| |||| Sbjct 529 GCCCAGCTCGTAATCGA 545 >seq45 Length=31681 Score = 98.7 bits (108), Expect = 3e-16 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 39046 ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATG 39105 || || |||||||| || | ||||| | | |||||||||||| | ||| ||||| Sbjct 23809 ACATAGCGGATCACCTCATCGCGGCGGTCCTGACAGAAGTCGATGTCAAAGTCAGGCATC 23868 Query 39106 GAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGA---GGGATGGGGTCC 39162 || |||||||||||||||| |||||||| || | ||| || | | | |||||| Sbjct 23869 GACACACGCTCAGGGTTCAAAAACCGCTCAAACAGGAG---GTTAAATCGCAGCGGGTCC 23925 Query 39163 AGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGG 39222 || || ||||| || | | ||| ||| ||| || || | || || || || || Sbjct 23926 AGATCTGTGATGGTCAGCACCCAGGCGACCACCGACCCGGCGCCTGACCCACGGCCCGGA 23985 Query 39223 CCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTA 39281 || ||| | ||| ||||| ||||| |||||||||||| |||| |||||||| Sbjct 23986 CCCACCGGGATATCGTGATCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTA 24044 >seq912 Length=4712 Score = 96.9 bits (106), Expect = 1e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 39009 GATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39068 |||||| | |||||||| |||| || || || ||||| |||||||| || |||| Sbjct 194 GATCTGGCCCACCTTGTCGGTGCCATATTTGTCCTGAACGTAGCGGATCACCTCTTCACG 135 Query 39069 GCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGG 39126 ||| | ||| |||||||||||| | ||| ||||| || ||||| || ||||| ||| Sbjct 134 GCG--GTCCATGCAGAAGTCGATGTCGAAGTCCGGCATAGAAACACGTTCGGGGTTGAGG 77 Query 39127 AACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTAC 39186 ||||| ||||| | ||| | | | ||||| ||||||||||| || || || Sbjct 76 AACCGTTCGAACAGAAGCTGATAGCGCAATGGGTCGAGGTCGGTGATGGTCAGCGCATAA 17 Query 39187 GCGGCCAGCGAGCCAG 39202 || ||| ||||||| Sbjct 16 GCCACCAAAGAGCCAG 1 >seq2710 Length=2059 Score = 95.1 bits (104), Expect = 4e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39082 AAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATG 39141 ||||||||||| | ||||||||| || || ||||||||||||||||||||||| || | Sbjct 2011 AAGTCGATGTCGAAGTCGGGCATCGATACCCGCTCAGGGTTCAGGAACCGCTCAAACAGC 1952 Query 39142 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39201 ||| | | | || || ||||| || ||| || || || || | ||||| || Sbjct 1951 AGCGAATATCGCAGCGGATCAAGGTCAGTAATCGTTAGCGCATAAGCCACAAGCGACCCC 1892 Query 39202 GCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAG 39261 || | || || || ||||| || || | ||| | || || |||| ||| ||| Sbjct 1891 GCGCCCGACCCCCGGCCAGGCCCCACGGCGATGCCCTGATCTTTGCCCCACTGGATAAAG 1832 Query 39262 TCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39296 ||||| |||| ||||| || ||| || ||||| Sbjct 1831 TCGGCAACGATCAGGAAATAGCCCGGAAAGCCCAT 1797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159683759763414