Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq3519 185 3e-42 seq45 127 7e-25 seq11188 105 2e-18 seq2710 96.9 1e-15 seq912 80.6 9e-11 >seq3519 Length=1701 Score = 185 bits (204), Expect = 3e-42 Identities = 304/433 (70%), Gaps = 14/433 (3%) Strand=Plus/Plus Query 40001 CTTGGTCAGCTTCTCGCC--GACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTC 40058 ||||| |||||| ||| | |||| | ||| |||| || | || |||||| | ||| | Sbjct 285 CTTGGACAGCTTGTCGGCCAGACC--GTAGGACTTGCCCTGTACCCGCGCCACATCCCGC 342 Query 40059 ATC---GCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCC 40115 | | || ||| |||| || | ||||||||| |||||||| ||| ||| Sbjct 343 ACCACCGCCTTGGCCGCCATGGT---ACCGAAGGTAATGATCTGTGAAACCGCTTCCCGG 399 Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATC--GAAGTCGA 40173 ||||| ||||| | ||| ||||| | |||| ||| ||| ||| |||| Sbjct 400 CCGTATTTCTCAGCCGTGTATTCAATCACCCGGTCCCG--GCCTTCCATGCAGAAATCGA 457 Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233 ||||| ||||||||||||||| || || |||||||||||||||||||| | || ||| Sbjct 458 CGTCAAAGTCGGGCATGGACACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCGT 517 Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293 | | ||||||||||| || || || |||||| ||||| ||||||||| | | Sbjct 518 ACTCCAGTGGGTCCAGGTCGGTAATCAGCAGCGCGTAGGCCACCAGGGAACCGGCACCGG 577 Query 40294 AGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40353 | || || ||||| || ||| || ||||| | ||||||||| ||| ||||| | Sbjct 578 AACCCCGGCCGGGCCCTACCGGTACACCGTTGTTCTTGGCCCACTTGATAAAGTCCATAA 637 Query 40354 CGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCT 40413 ||| |||||||||| ||||| |||| ||| ||||| ||||| | |||| ||| || Sbjct 638 CGATCAGGAAGTAGCCTGGGAAGCCCATCTGAATGATGATGTCCAGCTCGAACTTCAGGC 697 Query 40414 GCTTGCCATGCTC 40426 ||||| || ||| Sbjct 698 GCTTGTAATACTC 710 >seq45 Length=31681 Score = 127 bits (140), Expect = 7e-25 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||||||||||| ||| ||||| ||||| ||||| ||||||| |||||||| || | Sbjct 23844 GAAGTCGATGTCAAAGTCAGGCATCGACACACGCTCAGGGTTCAAAAACCGCTCAAACAG 23903 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 ||| | | |||||||| ||||||||| || ||||||||| ||| || Sbjct 23904 GAGGTTAAATCGCAGCGGGTCCAGATCTGTGATGGTCAGCACCCAGGCGACCACCGACCC 23963 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 ||| | || ||||| || || || ||| | ||| ||||||||||| |||||| Sbjct 23964 GGCGCCTGACCCACGGCCCGGACCCACCGGGATATCGTGATCCTTGGCCCATTTGATGAA 24023 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGAT 40390 |||||| |||| |||||||||| || || ||| | |||||| Sbjct 24024 GTCGGCAACGATCAGGAAGTAGCCTGGAAAATCCATATTGATGAT 24068 >seq11188 Length=750 Score = 105 bits (116), Expect = 2e-18 Identities = 229/341 (67%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 40067 GCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTC 40126 ||| |||| || | ||| ||||| |||||| |||||| ||| | ||||| || Sbjct 202 GCGAGCCTGGAGCGTACCAAAGGTGATGATCTGCGCGACCCGGTCATCGCCGTAGCGATC 261 Query 40127 GGTGACGTACCTGATCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCG 40184 | || || | |||||| ||||| || || || | || |||||||| ||| | ||| Sbjct 262 CCTCACATAGCGGATCACCTCGCCGCGCCGATCCTGACA--GAAGTCGACGTCGAAGTCT 319 Query 40185 GGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGG 40244 ||||| ||||| || |||||||| ||||| ||||| || | | |||| | | | || Sbjct 320 GGCATCGACACACGTTCGGGGTTGAGGAAACGCTCAAACAGCAACCCGAACCGAAGCGGA 379 Query 40245 TCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCG 40304 || || || || || ||| ||||||||||||| || || | || || || || Sbjct 380 TCAAGATCGGTAATCGTGAGCGCCCAGGCGACCAGCGAGCCAGCGCCTGAACCCCGCCCT 439 Query 40305 GGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAG 40364 ||||| ||| | | | ||| ||||| ||| ||||| | |||| |||||| Sbjct 440 GGTCCCACCGGAATATCCTGAGACTTTGCCCACTGGATAAAGTCCGAAACGATCAGGAAA 499 Query 40365 TAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTA 40405 || || ||||||| || ||| ||| | | |||||| Sbjct 500 TAACCAGGAAACCCCATCTTTTCGATGATGCCCAGCTCGTA 540 >seq2710 Length=2059 Score = 96.9 bits (106), Expect = 1e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 40167 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40226 ||||||||||| | ||||||||| || || ||||| ||||||||||||||||| || | Sbjct 2011 AAGTCGATGTCGAAGTCGGGCATCGATACCCGCTCAGGGTTCAGGAACCGCTCAAACAGC 1952 Query 40227 AGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAACC 40285 ||| | | | || || ||||| || || || ||| || || || ||||| || Sbjct 1951 AGCGAATATCGCAGCGGATCAAGGTCAGTAATCGTTAGCGCA-TAAGCCACAAGCGACCC 1893 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 || |||| || || || || || || | ||| | || ||| |||| ||| || Sbjct 1892 CGCGCCCGACCCCCGGCCAGGCCCCACGGCGATGCCCTGATCTTTGCCCCACTGGATAAA 1833 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCA 40380 |||||| |||| |||||| ||| ||| || |||| Sbjct 1832 GTCGGCAACGATCAGGAAATAGCCCGGAAAGCCCA 1798 >seq912 Length=4712 Score = 80.6 bits (88), Expect = 9e-11 Identities = 129/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 40082 ACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGAT 40141 ||| ||||| |||||| | |||||||| | || || || || ||||| | ||| Sbjct 206 ACCAAAGGTGATGATCTGGCCCACCTTGTCGGTGCCATATTTGTCCTGAACGTAGCGGAT 147 Query 40142 CACGTCGCCCCGTCGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40199 ||| || | || || | ||| |||||||||||| | ||| ||||| || || || Sbjct 146 CACCTCTTCACGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCCGGCATAGAAACACGT 89 Query 40200 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT-GCGGGATGGGGTCCAGGTCTGTGAT 40258 |||||||| |||||||| ||||| | ||| | ||| || ||||| ||||| ||||| Sbjct 88 TCGGGGTTGAGGAACCGTTCGAACAGAAGCTGATAGCGCAAT-GGGTCGAGGTCGGTGAT 30 Query 40259 G 40259 | Sbjct 29 G 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160109275983256