Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq486 188 1e-42 seq1036 136 6e-27 seq2046 100 4e-16 seq10619 87.8 3e-12 >seq486 Length=7659 Score = 188 bits (208), Expect = 1e-42 Identities = 192/251 (76%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCT---- 196126 || || |||||||||||||| |||| | ||||| || |||||||| || |||| Sbjct 3267 GATCGCACCGGCACGGGCACGCTCTCGGTCTTCGGCTACCAGATGCGCTTCAACCTCGAT 3208 Query 196127 ---GC-----GCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATC 196178 || || |||||||| |||||||||||||| ||| | ||| ||| || ||| Sbjct 3207 GAGGCCACCGGCGGCGGGTTCCCACTGGTCACCACCAAGAAGGTCCACACGCGCTCGATC 3148 Query 196179 ATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAAC 196238 |||||||| ||| |||||||||| || |||||||| |||||| || ||||| |||||| Sbjct 3147 ATCCACGAGCTGCTGTGGTTCCTCAAAGGCGACACGAACATCGCCTACCTGAAGGACAAC 3088 Query 196239 AACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGT 196298 || |||| |||||||| |||||||| |||| | ||| | || ||||| |||||||| Sbjct 3087 AAAGTCACCATCTGGGACGAGTGGGCCGATGCCGCCGGCAACCTCGGCCCGGTCTACGGC 3028 Query 196299 AAGCAGTGGCG 196309 ||||||||||| Sbjct 3027 AAGCAGTGGCG 3017 >seq1036 Length=4296 Score = 136 bits (150), Expect = 6e-27 Identities = 210/297 (71%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTT-GAACGAAGGTCACGAGAAAGCTGA 196072 |||||||| || | || || |||| | || || |||| | || || ||||| | || Sbjct 1690 ATGAAACAATACCTTGATTTAATGCGCCATGTATTAGAAC-ACGGCCATAAGAAAACCGA 1748 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 ||| |||||||| ||||||||| | | || || ||||| ||||||||||| | | | Sbjct 1749 CCGCACCGGCACAGGCACCATCAGTGTGTTTGGCTATCAAATGCGTTTTGATTTACAACA 1808 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 || || ||||| || ||||||||||| | || ||||| || || || || ||| | | Sbjct 1809 GGGCTTTCCGCTTGTTACCACCAAAAAATGCCATCTGCGTTCGATTATTCATGAATTACT 1868 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 |||||| | || || || |||||||| || ||| |||| || ||| ||||| Sbjct 1869 GTGGTTTTTAAAAGGTGAAACCAACATTGGCTACCTGCAAGAAAATGGCGTATCAATCTG 1928 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 | |||||||||| |||| || || || || || || ||||| ||||||||| Sbjct 1929 GAATGAGTGGGCGACTGAAACAGGTGAGCTCGGACCGGTATACGGCGCGCAGTGGCG 1985 >seq2046 Length=2500 Score = 100 bits (110), Expect = 4e-16 Identities = 78/92 (85%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 4114 TTTGGCGGGTTACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTT 4173 ||||| ||| ||| ||||||||||||| | ||||||||||||||||||| | || | ||| Sbjct 1391 TTTGGAGGGGTACCCAAGCGGTCAACGGGGGCAGACTGTAAATCTGTTGGC-TCAGCCTT 1333 Query 4174 CGTAGGTTCAAATCCTTCACACGCCACCAAAC 4205 ||||||||| |||||| | | | ||||||||| Sbjct 1332 CGTAGGTTCGAATCCTACCCCCTCCACCAAAC 1301 >seq10619 Length=779 Score = 87.8 bits (96), Expect = 3e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || || |||||||| |||||||||||||| || |||| || || || || ||||| || Sbjct 343 CTTTCGTGTCAGCTCTACCAGCGCAGTGCCGATATCTTTCTGGGGGTGCCCTTCAATATT 402 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 || || || || |||||| | ||| | || ||| | || || |||||| ||| Sbjct 403 GCCTCCTATGCGCTGTTGACAGAGATGATTGCCCAGGTCTGCGATCTGAAGGCGGGCGAT 462 Query 196869 TTCGTCTGGACGGGCGGCGATACCCATCTGTACTCT-AACCATCTGGAACAGGCC 196922 || ||| ||| || || | ||||| || ||| |||||||||||||||||| Sbjct 463 TTTGTCCACACGTTTGGTGACGCGCATCTTTA-TCTGAACCATCTGGAACAGGCC 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770147582719320