Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prorocentrum_20minimum_20[genbank_20GCA_5F001652855.1_202016-05-26] 16,577 sequences; 29,349,011 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq10619 170 7e-38 seq44 161 4e-35 seq486 118 4e-22 seq13573 109 2e-19 >seq10619 Length=779 Score = 170 bits (188), Expect = 7e-38 Identities = 300/434 (69%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 51825 ACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCTGTGGTTGCTTTCGGGC 51884 ||||||||||| ||||| || ||| | || ||| |||||||||| || |||| Sbjct 4 ACCACCAAGAAACTGCATCTCAAATCGATCATCCATGAGCTGCTGTGGTTTCTGGCGGGT 63 Query 51885 TCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGGGACGAATGGGCGGAT 51944 ||| ||| || | |||| | | | |||||| || |||||||||||||| || Sbjct 64 GATACCAACATCGCCTATCTGAAGGCGAATGGCGTCTCAATCTGGGACGAATGGGCCGAC 123 Query 51945 GAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGTTGG--GATGCTGG-T 52001 ||||| || | ||||| || || || || | || ||||| || ||| ||||| | | Sbjct 124 GAAAACGGCGATCTGGGGCCGGTCTACGGCCATCAATGGCGCAGCTGGCCGATGCCCGAT 183 Query 52002 GGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAATTAAGAACGATCCTGAT 52061 |||||| | ||||| ||||| | ||| || || || || | | | || || Sbjct 184 GGCGGCCAT---ATCGACCAGATTGCCGCAGTGGTGAACCAGATCAAAACCAACCCGGAC 240 Query 52062 AGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCT 52121 || || || || || ||| ||| |||||||| | |||| | |||| |||||| || | Sbjct 241 AGCCGTCGACATATCGTCAGTGCCTGGAATGTCGCTGATGTTGATGGTATGGCCCTGCCG 300 Query 52122 CCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTAT 52181 || |||||| || || || |||||||| ||||| || ||||||||||| || | || Sbjct 301 CCATGCCATTGCCTGTTTCAGTTCTATGTGGCTGACGGCAAGCTTTCGTGTCAGCTCTAC 360 Query 52182 CAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTG 52241 ||||| |||||| || || |||| || || || || |||||| |||| | || || Sbjct 361 CAGCGCAGTGCCGATATCTTTCTGGGGGTGCCCTTCAATATTGCCTCCTATGCGCTGTTG 420 Query 52242 ACGCATCTGATTGC 52255 || | ||||||| Sbjct 421 ACAGAGATGATTGC 434 >seq44 Length=32007 Score = 161 bits (178), Expect = 4e-35 Identities = 235/329 (71%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 51915 GGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGT 51974 || || |||||||||||||||||||||||||| || ||| | || || || || ||||| Sbjct 27533 GGGGTGAGCATTTGGGACGAATGGGCGGATGAGAAGGGTGATCTCGGGCCAGTCTATGGG 27592 Query 51975 AAGCAGTGGCGTAGTTGGG--ATGCTGGT-GGCGGCAAGGTCATCGATCAGATCCATGAA 52031 | |||||||| || ||| | || | ||||||| | || ||||||||| | | Sbjct 27593 CACCAGTGGCGCAGCTGGCCCACGCCCGACGGCGGCACG---ATTGATCAGATCAAAAAC 27649 Query 52032 GTCGTCAAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAAT 52091 | | | || |||| |||| || || |||| || || || || |||||| Sbjct 27650 CTGATTGACCAGATCGAGAATAATCCAGACTCCCGGCGGCTGATCGTGTCGGCCTGGAAT 27709 Query 52092 GTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTA 52151 |||| || | ||| |||||||| || | ||||| || || ||||| |||||||| Sbjct 27710 GTGGCGGACGTAGATAATATGGCGCTGCCGCCCTGTCACTGTCTGTTCCAGTTCTATGTG 27769 Query 52152 GCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTT 52211 || || || |||||||| ||||| | |||||||| || || || ||||||||||||| Sbjct 27770 GCGGACGGCAAGCTTTCCTGCCAGCTCTATCAGCGCTCCGCTGATGTGTTCTTGGGCGTG 27829 Query 52212 CCGTTTAACATTGCCAGCTATTCCTTGCT 52240 ||||| ||||| ||| |||| | |||| Sbjct 27830 CCGTTCAACATCGCCTCCTATGCGCTGCT 27858 >seq486 Length=7659 Score = 118 bits (130), Expect = 4e-22 Identities = 349/531 (66%), Gaps = 8/531 (2%) Strand=Plus/Minus Query 51810 GGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCTG 51869 || ||||| || |||||||||||||||| || | || | || ||| ||||| Sbjct 3192 GGGTTCCCACTGGTCACCACCAAGAAGGTCCACACGCGCTCGATCATCCACGAGCTGCTG 3133 Query 51870 TGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGG 51929 ||||| || ||| |||||| || | | || | | || |||| ||| ||| Sbjct 3132 TGGTTCCTCAAAGGCGACACGAACATCGCCTACCTGAAGGACAACAAAGTCACCATCTGG 3073 Query 51930 GACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGT 51989 ||||| ||||| |||| || ||||| || || || || || ||||||||||| Sbjct 3072 GACGAGTGGGCCGATGCCGCCGGCAACCTCGGCCCGGTCTACGGCAAGCAGTGGCGCTCC 3013 Query 51990 TG--GGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCA-ATT 52046 || | | || | ||||| | ||||| |||||| | |||||| |||| || Sbjct 3012 TGGCGCACGCCG--GGCGGGGACACGATCGACCAGATCGCCGGTGTCGTC-GATCAGATC 2956 Query 52047 AAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGAT 52106 ||| | | || || || |||| |||||| || ||||| |||| || | || Sbjct 2955 AAGCGCAACCCCGACTCGCGCCGGCTGATTGTCAGCGCGTGGAACGTGGCCGAACTCGAC 2896 Query 52107 GATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTT 52166 | ||||| || | || ||||| || ||||| ||||| || || | || ||||| Sbjct 2895 CAGATGGCCCTGCCGCCGTGCCACCTGCTGTTCCAGTTCTACGTCGCCGGCGGCAAGCTG 2836 Query 52167 TCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCC 52226 ||||| | || ||||| || || ||| ||||| | ||||| ||||| ||||| ||| Sbjct 2835 AGCTGCCAGCTCTACCAGCGCTCGGCGGACCTGTTCCTCGGCGTGCCGTTCAACATCGCC 2776 Query 52227 AGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGTTGGCCTT-GATGTTGGTGAATT 52285 || || || | |||||||| |||| || | || | || || | || || || || Sbjct 2775 AGTTACGCCATCCTGACGCACATGATCGCGC-AGGTGACGGGATTGGGAGTGGGGGACTT 2717 Query 52286 CATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCAGGT 52336 | | || ||||| | || ||||||| |||||| || || ||||| Sbjct 2716 CGTGCACACCTTCGGCGATGCGCACATCTACACCAACCACGTCGAGCAGGT 2666 >seq13573 Length=635 Score = 109 bits (120), Expect = 2e-19 Identities = 234/344 (68%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 51923 CATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTG 51982 |||||||||||| ||||| ||||| || ||| | || || ||||| ||||||||||| || Sbjct 42 CATTTGGGACGAGTGGGCCGATGAGAACGGTGATCTCGGACCTGTTTATGGTAAGCAATG 101 Query 51983 GCGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATC 52042 ||||||||||| ||| | || ||| || ||||| || || | | || | | Sbjct 102 GCGTAGTTGGGTTGCGCCGGATGGTCGGGTGATTGATCAAATTCA-GTGGGTGTTAGACG 160 Query 52043 A-ATTAAGAACGATCCTGATAGTCGACGGC---ACATTGTCTCTGCTTGGAATGTGGGTG 52098 | ||||| | | |||| | | ||| |||| | ||||||||||||||| || || Sbjct 161 AGATTAAAACCAATCC--AAACTCG-CGGCGTTTGGTCGTCTCTGCTTGGAATCCGGCTG 217 Query 52099 ATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAG 52158 | || ||||||||| || | || ||||| || || || || | || || | Sbjct 218 ACGTGCCCGATATGGCGCTGCCGCCATGCCACTGCCTGTTTCAGTTTAACGTTATGGACG 277 Query 52159 GTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTA 52218 | ||||| || || | ||||| || || || || | ||| | || || ||||| | Sbjct 278 GAAAGCTAAATTGTCAGCTCTATCAACGTTCGGCTGATGTCTTCCTTGGTGTCCCGTTCA 337 Query 52219 ACATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCA 52262 | || || |||| | ||||||||| |||| || |||||| Sbjct 338 ATATCGCATCCTATGCTTTGCTGACGATGATGATGGCGCGAGCA 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190058579245970