Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq88 159 3e-34 >seq88 Length=166103 Score = 159 bits (176), Expect = 3e-34 Identities = 259/368 (70%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 101791 AGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 |||||| ||||| || ||||| | ||||||||| ||||||| || | |||| || Sbjct 90044 AGCAATATTAAAGGGAACTCCAAGTCCCATATCACAAGATCTTTAGTATAAAAGACATGA 90103 Query 101851 AAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTT 101910 | ||||||||| ||||| || | || ||||||||||| || || ||||||| Sbjct 90104 TAATTTTCCATCATTAACATAGAACTATGCCAAAACATGACAAGGAGGTAAAGCCATTTT 90163 Query 101911 AGGAATGTCTGAAACATTCCAAGCACACATTAACATC-CTTCT---ATCTGTAGGGTTTG 101966 ||| ||||| || ||||| ||||| | || || ||||| ||||| | || Sbjct 90164 AGGGATGTCAGAGGGGTTCCATGCACAGAA-AATATGTCTTCTGGAATCTGGA----TTA 90218 Query 101967 TTTTTATAGTA-TCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGC 102025 ||||| | || | ||| || | ||||| || ||| || |||| ||||| |||| | Sbjct 90219 TTTTTCAATTAATTAATTAAATTTTTTATTTAGTCGACACCTTATCCTTCGTAATTGGTG 90278 Query 102026 CCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGA 102085 | | |||| ||||| || |||||||| ||||| | ||||||||| | || || | | Sbjct 90279 TGCATATCTTTGTATTCGGCGCCGAAATGTCTCCATTAAAATCCATAAATTGGCCCTAAA 90338 Query 102086 TCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCA 102145 || ||| || ||||| | |||||| | |||||||||||| |||| |||||| | Sbjct 90339 TCATTTTCTTCCCTGTCTTTAAAACCTAAGTTATCTAAAAATTCTCTACTTCCATTTCCT 90398 Query 102146 TCCCAAAT 102153 |||||||| Sbjct 90399 TCCCAAAT 90406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249932008288